PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_4AL_161D3D25E.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

FAR1

Protein Properties

Length: 288aa MW: 32916.9 Da PI: 9.878

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_4AL_161D3D25E.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	31.1	7.6e-10	82	161	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fYn Y+ e+GF +r ks+ + +++ +++ vC ++gk+e+ +++ + ++ a +++ + +++ w++t+ + HnH+ Traes_4AL_161D3D25E.2 82 DFYNLYSWELGFGIRYGKSRLNA-ERTKGMQEIVCGCSGKPETGNSQ---------SCICEFPALIRLLRASNNSWYITEHRASHNHS 159 6***************99984.4447899*****9987655.........5566667999999999*************9 PP FAR1 89 la 90 ++ Traes_4AL_161D3D25E.2 160 MS 161 85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.4E-6	82	161	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MVFLGWLKWR TKEQLQTDKK VTSVFVLNLR RGPPDGLKDR VPCPSRMSAL EVSILKYAEQ 60 PDKSVVRPEL GLSFDSLGEA YDFYNLYSWE LGFGIRYGKS RLNAERTKGM QEIVCGCSGK 120 PETGNSQSCI CEFPALIRLL RASNNSWYIT EHRASHNHSM SLTMGEKVHW PSHKHIDIYT 180 KHLIKQLREN NVNLGKVYSI VGSFFGSVKK VPFTKRTLRS ICGKISREQA EDDVQKTLEA 240 FADIQANTIA KLILNFFERV AGIRWEVLSL NRQVVAQPEG RGMMRSWD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020156512.1	1e-128	protein FAR1-RELATED SEQUENCE 12-like
TrEMBL	A0A1D5URD4	1e-126	A0A1D5URD4_WHEAT; Uncharacterized protein
STRING	Traes_4AL_161D3D25E.2	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP619	19	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	2e-09	FAR1-related sequence 7

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]