PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4AL_0CCA685F3.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | B3 | ||||||||
Protein Properties | Length: 186aa MW: 21072.2 Da PI: 11.0361 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 31.1 | 4.2e-10 | 108 | 185 | 13 | 97 |
TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 ++ +++p + a++ g+ s t++le ++g + + + ++k g+ vl++GW +Fv +++ke+ ++ F + g+s+f +v++f Traes_4AL_0CCA685F3.1 108 RRSMCIPWEVANHLGSM--ISETIKLEAPNG-IFLIGV--CRKTGELVLRAGWDKFVAMHHIKENYSFWFVYRGNSTF--KVHIF 185 45699999999555543..7789*****998.578888..89999***************************999999..88877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.18E-15 | 93 | 186 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 9.9E-14 | 95 | 186 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.38E-12 | 106 | 186 | No hit | No description |
Pfam | PF02362 | 7.4E-8 | 109 | 185 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
QIRLLHPSPI YGSRRPPPPA LNRASRRPGA PRLPPPISPV RANGDEPERP QLLRPLSPEQ 60 PHPSPSSQQG LPGRSARESC TMWWRHYPRN HVGDDKTQFV AVATGGFRRS MCIPWEVANH 120 LGSMISETIK LEAPNGIFLI GVCRKTGELV LRAGWDKFVA MHHIKENYSF WFVYRGNSTF 180 KVHIFN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A3B6HWQ5 | 6e-72 | A0A3B6HWQ5_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A3B6I0A4 | 6e-72 | A0A3B6I0A4_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446R9S8 | 6e-72 | A0A446R9S8_TRITD; Uncharacterized protein | ||||
TrEMBL | A0A446RA15 | 6e-72 | A0A446RA15_TRITD; Uncharacterized protein | ||||
STRING | Traes_4AL_0CCA685F3.1 | 1e-135 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16363 | 4 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 2e-10 | B3 family protein |
Publications ? help Back to Top | |||
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