PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_3DS_ECB844CBC.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | B3 | ||||||||
Protein Properties | Length: 323aa MW: 35837.3 Da PI: 5.6005 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.4 | 2.7e-18 | 208 | 298 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k +++s+v +l lp +f+++h k +++ ++lede+g ++ k+ + +++ l++GW++F+ +++k+gD+vvF+l+++ Traes_3DS_ECB844CBC.1 208 FVKHMLHSHVVHGFWLGLPSDFCNKHLPK--KDTAVVLEDEDGHNYDAKY--LGAKQG--LSAGWRGFAINHDIKVGDVVVFQLVSSA 289 899********************999533..5679***************..888877..9**********************98766 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 +f v ++r+ Traes_3DS_ECB844CBC.1 290 KF--QVYILRA 298 66..9998886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 6.28E-24 | 202 | 299 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.9E-21 | 202 | 299 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.66E-26 | 206 | 297 | No hit | No description |
Pfam | PF02362 | 1.6E-16 | 208 | 298 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.1E-19 | 208 | 299 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.465 | 208 | 299 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MALVHRRLAL LDSESXEEVP RPVNNSERDK MVMEKKMALV HRRLALLDSE SDKETDVVPT 60 ATMDDRLAIV VDQQPVVINC DDTDDKDEYV PLRIVRPRRA DSEQKRLFDV SQTHNAQDTD 120 TAKKKRGRLV NAKSDMEQKL NMSTPGLALV ESGGSNSSKS DVDDDLVPMQ VAAVNCQKTC 180 TSVQGNFGSA MERAEELLVE LPAEHPSFVK HMLHSHVVHG FWLGLPSDFC NKHLPKKDTA 240 VVLEDEDGHN YDAKYLGAKQ GLSAGWRGFA INHDIKVGDV VVFQLVSSAK FQVYILRANN 300 FTTTDGALGL LCLEAGKEKI PSE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 1e-103 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020189684.1 | 0.0 | B3 domain-containing protein Os01g0234100-like | ||||
TrEMBL | A0A453EIU1 | 0.0 | A0A453EIU1_AEGTS; Uncharacterized protein | ||||
STRING | Traes_3DS_ECB844CBC.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6080 | 23 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 3e-38 | B3 family protein |
Publications ? help Back to Top | |||
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