PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3DS_9A02CF31D.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 303aa    MW: 34753.6 Da    PI: 7.2583
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3DS_9A02CF31D.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY84.97.3e-27218278158
                            ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                   WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                            ldDg++WrKYGqK++ ++++pr+Y+rCt++   gC+++k+v+r+++dp+++ + Y+g+H++
  Traes_3DS_9A02CF31D.1 218 LDDGFSWRKYGQKDILDAKHPRAYFRCTYRksqGCSATKEVQRTDDDPELFLVLYKGKHTC 278
                            59***************************98889*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.80.10.101.7E-813168IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520585.78E-1016171IPR032675Leucine-rich repeat domain, L domain-like
PROSITE profilePS5081122.091213276IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.2E-26216278IPR003657WRKY domain
SuperFamilySSF1182904.97E-24216278IPR003657WRKY domain
SMARTSM007741.2E-37218280IPR003657WRKY domain
PfamPF031063.1E-25219278IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MDELHDMERR QRLDVLTCSL EKLCDLRYLH MDYNIKVSYV LSSLFLRRLH MLCPFPKVPN  60
AIGELHNLFD LDLTIEVLED DIAILAQLQS LNRLKLHIEG KPETEEKVVI CRKGFPVLKH  120
FWLFCVRMSQ LTFEAGTMPS LEKLEVRINS LYGAAPMGIE HLLGLKEIFV FVGGCGGEGS  180
CSIRAALTLL RKAIDMRSSH PTANIKCVDN LLLLEHLLDD GFSWRKYGQK DILDAKHPRA  240
YFRCTYRKSQ GCSATKEVQR TDDDPELFLV LYKGKHTCIM ETSQASQEQR VLVPQLGLQE  300
KLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-23218278868OsWRKY45
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165042.10.0putative disease resistance RPP13-like protein 3 isoform X1
RefseqXP_020165043.10.0putative disease resistance RPP13-like protein 3 isoform X1
TrEMBLA0A3B6GL950.0A0A3B6GL95_WHEAT; Uncharacterized protein
STRINGTraes_3DS_9A02CF31D.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24110.17e-26WRKY DNA-binding protein 30
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]