PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3DS_61692C8F3.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 289aa    MW: 31686.9 Da    PI: 6.7179
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3DS_61692C8F3.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.92.3e-133377347
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                           +WT+eE+ l++ + ++lG+g+W+ I+r +   Rt+ q+ s+ qky
  Traes_3DS_61692C8F3.1 33 PWTEEEHRLFLLGLQKLGKGDWRGISRSFVVSRTPTQVASHAQKY 77
                           8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.6452582IPR017930Myb domain
SMARTSM007172.2E-103080IPR001005SANT/Myb domain
SuperFamilySSF466897.48E-163083IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-173281IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.604.8E-113276IPR009057Homeodomain-like
PfamPF002495.5E-113377IPR001005SANT/Myb domain
CDDcd001671.74E-93378No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
FSFLKCTWAS LLLYVIIVSA ASNHRPICAS GTPWTEEEHR LFLLGLQKLG KGDWRGISRS  60
FVVSRTPTQV ASHAQKYFIR QTNFSRRKRR SSLFDMVPEM PMDESPDGAE EFTLCTTQDE  120
TTSSNKLSLF HLGRQKEAEC DKDLPTLQLR QHEESEYAGP SLEAPDLEMN NGVSFKAASV  180
STVPAFYPAL LPVPLTLWPA NVSNVEAANA THEVLKPTPV NLKEAIKADE VVSMSKLSIG  240
GGTSGSMEPS ALSLQLTGPT NTRQSAFHVS PPMTRTDLSQ GNNSPIHAV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3716730.0AK371673.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2139L02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020189174.10.0transcription factor MYB1R1-like
TrEMBLA0A3B6GMG90.0A0A3B6GMG9_WHEAT; Uncharacterized protein
TrEMBLA0A453E6L40.0A0A453E6L4_AEGTS; Uncharacterized protein
STRINGTraes_3DS_61692C8F3.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19393791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.14e-45MYB_related family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]