PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3DL_C1684BF20.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 910aa    MW: 100980 Da    PI: 8.9965
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3DL_C1684BF20.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.60.0017743765323
                            ET..TTTEEESSHHHHHHHHHHT CS
                zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                            Cp   Cgk F ++  L +H ++H
  Traes_3DL_C1684BF20.2 743 CPvkGCGKKFFTHKFLLQHRKVH 765
                            9999*****************99 PP
2zf-C2H212.80.00036817839323
                            ET..TTTEEESSHHHHHHHHHHT CS
                zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                            Cp   Cgk F ++ +L +H ++H
  Traes_3DL_C1684BF20.2 817 CPvnGCGKKFFTHKYLLQHRKVH 839
                            9999*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035517718740IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.847741770IPR007087Zinc finger, C2H2
SMARTSM003551.8741765IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.6E-4742766IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280743765IPR007087Zinc finger, C2H2
SMARTSM0035546792814IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.487815844IPR007087Zinc finger, C2H2
SMARTSM003550.56815839IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280817839IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.2E-6817838IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.27E-10831873No hitNo description
Gene3DG3DSA:3.30.160.608.0E-6839851IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.323845874IPR007087Zinc finger, C2H2
SMARTSM003550.0062845869IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280847869IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-4852867IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.98E-7863897No hitNo description
Gene3DG3DSA:3.30.160.602.1E-8868897IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035513875901IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.12875906IPR007087Zinc finger, C2H2
PROSITE patternPS000280877901IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 910 aa     Download sequence    Send to blast
MCIRDPSIGA MEPRSSRLKE KKKGEGGQLV KKLFVQNAIQ DNELLSCLLN DGSSCIILPI  60
NAHDGPVLSA LRSRSQLIPK SKLSRCTHDS HNAEGDKADV ISAAGLLDQG LLSCVSCGIL  120
SFSCVAVIKP RECASKYFMS SDYNSINDQI VGSGGSHLAN AAGSEGTNGG ILRPSFEPYG  180
NAILPDAGPV TRNSAPDLLA SPYGNQPDTD EDNRNKKIKV SHDSSELDGT KIPSSSIKCQ  240
QRPSSQSSQC IGGSSISNGP RGVRTRNKYR LKMALSQGFQ LKNNYWTMEQ KVQPEPSRSK  300
ETVKEPLDVN GAENDATCNS AAISVGDPRI STTTMDNLNK PIVKIDKDSS RMHVFCLEHA  360
VEVEKQLQAI GGAHVILLCR PEYLKIEAEA RSLAAELEVE HGWKDIHFRE ANMEDRKMIE  420
ELLQDEESIP TSSDWAVKLG TNLYYSANLA KSPLHNKQIP YNRVIYRAFG CSSPDNSPVK  480
LENCEGSQDR QKKIVLAGRW CGKAWMSNQV HPFLAQRIET SELEEADKSS GVEASKRKSS  540
TITNVPKSSK KRENMAVEVT TDTKRPRLAE GHSSKALKGV AEVSHPAPTA VVPRVSSRIA  600
DRANKLKSEM TEEDDDPACR PKPKVTSHSR RRPPKKIEVE AKKQMKMSKG DKMMVPTAPN  660
DDEEHPSAAK GGPSAGPATK LELSPRKHRT RTKTMKQLKK ATGEERTPRD HPMHVEGYTC  720
SIEGCSMSFD TRNELSLHEL DICPVKGCGK KFFTHKFLLQ HRKVHTETMK QLKKATGEER  780
APRDHPMRVE GYTCGIESCS MSFDTKKELS LHERDICPVN GCGKKFFTHK YLLQHRKVHT  840
EDRPLKCPWE GCDVAFKWAW ARTEHLRVHT GDRPYVCREP GCAETFRFVS DSSRHKRETG  900
HSTKQTKTKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A4e-5779190622137Lysine-specific demethylase REF6
6a58_A4e-5779190622137Lysine-specific demethylase REF6
6a59_A4e-5779190622137Lysine-specific demethylase REF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-27' (H3K27me) of histone H3 with a specific activity for H3K27me3 and H3K27me2. No activity on H3K4me3, H3K9me3, H3K27me1 and H3K36me3. Involved in biotic stress response. May demethylate H3K27me3-marked defense-related genes and increase their basal and induced expression levels during pathogen infection. {ECO:0000269|PubMed:24280387}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress, abscisic acid (ABA), jasmonic acid (JA), the ethylene precursor ACC and infection by the bacterial pathogen Xanthomonas oryzae pv. oryzae. {ECO:0000269|PubMed:24280387}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164795.10.0lysine-specific demethylase JMJ705-like
SwissprotQ5N7120.0JM705_ORYSJ; Lysine-specific demethylase JMJ705
TrEMBLA0A453G8780.0A0A453G878_AEGTS; Uncharacterized protein
STRINGTraes_3DL_C1684BF20.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53463246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.13e-54relative of early flowering 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]