PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_3DL_575C5670C.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 221aa MW: 24608.7 Da PI: 7.1574 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 31.8 | 4.7e-10 | 67 | 138 | 1 | 82 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkle 82 +fYn Y+ e GF +r ks+ + +++ +++ vC ++gk+++e+++ + r++C a++ + +++d+ w++t+ + Traes_3DL_575C5670C.2 67 DFYNLYSWEHGFGMRYGKSRLNAEKT-KCMQEVVCGCSGKPTKENSR---------SCRCECPAMISLLRTSDNGWYITEHR 138 6*****************99995555.678899*******9997666.........99********************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 6.1E-7 | 67 | 138 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
LLWEITRNKF WSVCRIRVGN QPPGRAPCPE RVGVLEQTIR GYADKLGDHV VEPAIGLTFD 60 SLCESYDFYN LYSWEHGFGM RYGKSRLNAE KTKCMQEVVC GCSGKPTKEN SRSCRCECPA 120 MISLLRTSDN GWYITEHRAN RKPCFDADMW GEGYGCSRLY RDIRNSDTQE VDTGCKGCFA 180 ATPEGVPAGS CWGQDDDKSA HNTLCARDGI GTTRGCISGS I |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 1e-111 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020198214.1 | 8e-64 | protein FAR1-RELATED SEQUENCE 11-like isoform X2 | ||||
TrEMBL | A0A446PVH6 | 6e-59 | A0A446PVH6_TRITD; Uncharacterized protein | ||||
STRING | Traes_3DL_575C5670C.2 | 1e-164 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP619 | 19 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06250.1 | 2e-08 | FAR1-related sequence 7 |
Publications ? help Back to Top | |||
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