PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_3DL_37D040907.1 | ||||||||
Common Name | TRAES_3BF026400090CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 47aa MW: 5806.81 Da PI: 10.671 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 35.7 | 1.5e-11 | 1 | 24 | 33 | 56 |
HHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 33 LAkklgLterqVkvWFqNrRakek 56 LA kl+L rqV vWFqNrRa+ k Traes_3DL_37D040907.1 1 LAIKLKLRPRQVEVWFQNRRARTK 24 899*******************98 PP | |||||||
2 | HD-ZIP_I/II | 73 | 5.9e-24 | 1 | 47 | 32 | 78 |
HD-ZIP_I/II 32 lareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeene 78 la +L+l+prqv+vWFqnrRARtk+k++E+++e+Lkr++ +l+een+ Traes_3DL_37D040907.1 1 LAIKLKLRPRQVEVWFQNRRARTKLKHTEMECEYLKRCFGSLTEENR 47 799****************************************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS00027 | 0 | 1 | 24 | IPR017970 | Homeobox, conserved site |
Gene3D | G3DSA:1.10.10.60 | 4.3E-10 | 1 | 33 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 5.7E-9 | 1 | 24 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 12.131 | 1 | 26 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.73E-5 | 1 | 27 | No hit | No description |
SuperFamily | SSF46689 | 3.7E-10 | 1 | 35 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 47 aa Download sequence Send to blast |
LAIKLKLRPR QVEVWFQNRR ARTKLKHTEM ECEYLKRCFG SLTEENR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. | |||||
UniProt | Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF145727 | 4e-56 | AF145727.1 Oryza sativa homeodomain leucine zipper protein (Oshox3) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020154762.1 | 7e-27 | homeobox-leucine zipper protein HOX3 | ||||
Swissprot | Q0JKX1 | 1e-26 | HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3 | ||||
Swissprot | Q9XH38 | 1e-26 | HOX3_ORYSI; Homeobox-leucine zipper protein HOX3 | ||||
TrEMBL | A0A453F480 | 1e-25 | A0A453F480_AEGTS; Uncharacterized protein | ||||
TrEMBL | A0A453F4A2 | 2e-25 | A0A453F4A2_AEGTS; Uncharacterized protein | ||||
TrEMBL | W5CTY7 | 2e-25 | W5CTY7_WHEAT; Uncharacterized protein | ||||
STRING | Traes_3B_436FBF290.1 | 3e-26 | (Triticum aestivum) | ||||
STRING | Traes_3DL_37D040907.1 | 9e-27 | (Triticum aestivum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01430.1 | 2e-22 | homeobox-leucine zipper protein 17 |
Publications ? help Back to Top | |||
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