PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3DL_30CF35BB3.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 76aa    MW: 8931.12 Da    PI: 9.3177
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3DL_30CF35BB3.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.87e-103170445
                           S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
        Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                           +T+ E++l  + +++ G++ W++Ia +++ gRt++++  +w 
  Traes_3DL_30CF35BB3.1 31 FTEAEEDLVFRMHRLVGNR-WELIAGRIP-GRTAEEVEMFWA 70
                           9******************.*********.*******99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.8E-72775IPR001005SANT/Myb domain
SuperFamilySSF466895.23E-93072IPR009057Homeodomain-like
PROSITE profilePS500906.6553173IPR017877Myb-like domain
CDDcd001672.79E-73169No hitNo description
PfamPF002496.1E-93170IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-123171IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:1900033Biological Processnegative regulation of trichome patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 76 aa     Download sequence    Send to blast
MSRESLGKNS KIMGGRERKE VNSTAKHFVD FTEAEEDLVF RMHRLVGNRW ELIAGRIPGR  60
TAEEVEMFWA KRHQDQ
Functional Description ? help Back to Top
Source Description
UniProtMYB-type transcription factor involved in trichome cell specification. Acts as a negative regulator of trichome patterning and formation. May function by suppressing the expression of GL3. {ECO:0000269|PubMed:22168948}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9519331e-119JF951933.1 Aegilops speltoides clone TaMYB50 MYB-related protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165156.14e-50MYB-like transcription factor TCL2
RefseqXP_020165157.14e-50MYB-like transcription factor TCL2
RefseqXP_020172618.14e-50MYB-like transcription factor TCL2
RefseqXP_020172619.14e-50MYB-like transcription factor TCL2
SwissprotB3H4X84e-19TCL2_ARATH; MYB-like transcription factor TCL2
TrEMBLA0A453F2H51e-48A0A453F2H5_AEGTS; Uncharacterized protein
STRINGTraes_3DL_30CF35BB3.12e-49(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52753157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30424.12e-21MYB_related family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang M,Hu Y,Liu X,Li Y,Hou X
    Arabidopsis LEAFY COTYLEDON1 controls cell fate determination during post-embryonic development.
    Front Plant Sci, 2015. 6: p. 955
    [PMID:26579186]