PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_3DL_19DD13245.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 196aa MW: 22674.2 Da PI: 8.9393 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 49.8 | 1.1e-15 | 44 | 123 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 ++Yn Y+ e+GF +r ks+++ +g ++++ C++ gk+++ +++ ++rt+C a++++ +++d+ w++ + + HnHe Traes_3DL_19DD13245.1 44 DYYNLYSWECGFGIRYGKSRTN-VKGAKSMQELLCNCGGKPKKVNSS---------SSRTECPAMIRLLRTEDDGWYICEYRVSHNHE 121 69****************9998.7777999**********9987655.........9******************************9 PP FAR1 89 la 90 + Traes_3DL_19DD13245.1 122 ML 123 85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 7.1E-12 | 44 | 123 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
LSLLCITMIL RVRRNFFEIT AFPNNIVVVP LMGLTFDSLG EAYDYYNLYS WECGFGIRYG 60 KSRTNVKGAK SMQELLCNCG GKPKKVNSSS SRTECPAMIR LLRTEDDGWY ICEYRVSHNH 120 EMLHTCAQKL HFPSHRHIDK YTRELVSQLR QNNVNLSKVY SIIGTFFGRI ENVPFTKRCL 180 RTLCAKLSRD QADEDV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020180988.1 | 4e-90 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A453G3W1 | 1e-124 | A0A453G3W1_AEGTS; Uncharacterized protein | ||||
STRING | Traes_3DL_19DD13245.1 | 1e-146 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP619 | 19 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52520.1 | 8e-14 | FAR1-related sequence 6 |
Publications ? help Back to Top | |||
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