PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_3DL_01DA17F63.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | B3 | ||||||||
Protein Properties | Length: 531aa MW: 59600.9 Da PI: 8.8172 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 50.7 | 3.3e-16 | 23 | 103 | 13 | 99 |
TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 + lv+p f++++ggk + t++le+++g++++v + + + +r++l++GW +Fv+an+++e+ +++F++ g+ +f +v++f++ Traes_3DL_01DA17F63.1 23 VHSLVIPEWFVSQFGGKVWR--TVKLESPDGNVYDVGV--TENMNRTILKSGWASFVDANKIEENYSLMFHYLGNARF--KVTIFDS 103 5779**********999766..8***************..*********************************98888..9999986 PP | |||||||
2 | B3 | 46.7 | 5.7e-15 | 445 | 526 | 17 | 99 |
E--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS B3 17 vlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 +l k++++ h gkk + + l+l+ ++r+W+ +l r++ +r+ + kGW Fv+ n+L++gD ++Fkl+++ + +++v ++r+ Traes_3DL_01DA17F63.1 445 YLEKQYFTGHRGKK-NVISLVLQReGKSRTWDTEL--RRGTDRMRICKGWVAFVRGNRLRVGDLCLFKLMESeEPLKMMVYIIRR 526 57788888885554.4466888774566*******..********************************9888*********998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.111 | 11 | 104 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.96E-16 | 13 | 102 | No hit | No description |
SuperFamily | SSF101936 | 1.94E-18 | 14 | 108 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.4E-10 | 14 | 104 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.8E-14 | 21 | 103 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-17 | 21 | 105 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-10 | 225 | 320 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.04E-10 | 226 | 320 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.39E-9 | 230 | 321 | No hit | No description |
SMART | SM01019 | 0.053 | 232 | 326 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 7.1E-15 | 410 | 528 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.3E-14 | 413 | 525 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.81E-14 | 416 | 525 | No hit | No description |
SMART | SM01019 | 2.0E-5 | 433 | 527 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.1E-12 | 445 | 526 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.196 | 463 | 527 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 531 aa Download sequence Send to blast |
MSDPCECCQI KLKFLRQING NFVHSLVIPE WFVSQFGGKV WRTVKLESPD GNVYDVGVTE 60 NMNRTILKSG WASFVDANKI EENYSLMFHY LGNARFKVTI FDSSGKQKAS CCARMGTAAS 120 DVRNPSTFDV DNSSSSCGGG TQSSPSERSD SDGSQKESSY GYKKSAKKAA ISDSSEGLSA 180 EDSLSRDNLV ESYDVQEHLN DYVLSGKCDL TVAQEAKIQA LVEKIRSEIP VLVVQMKKTS 240 ANFGNLIIRK DYALKYFPCE ATNIILQLPR KNKEWKCRFN PGRRNLYLGY FVHDNCVQEG 300 DICLFQPIAK VKEGRFTVIV HLLHKESVHR SPGGTAGMTH TPTDGRTGAK TSLTARVKEE 360 PATDGEDMSS LGHKEDGDNS EGAPETPFIL PDRASITPAQ EQKVWKKVEA IESTVPVYVA 420 ILNKCNVSRK YGITITMGKQ YVSRYLEKQY FTGHRGKKNV ISLVLQREGK SRTWDTELRR 480 GTDRMRICKG WVAFVRGNRL RVGDLCLFKL MESEEPLKMM VYIIRREKCL D |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020198702.1 | 0.0 | B3 domain-containing protein Os03g0619600-like | ||||
TrEMBL | A0A3B6H2X1 | 0.0 | A0A3B6H2X1_WHEAT; Uncharacterized protein | ||||
STRING | Traes_3DL_01DA17F63.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP585 | 31 | 172 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 1e-12 | B3 family protein |
Publications ? help Back to Top | |||
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