PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_3B_8B0D448D8.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | WRKY | ||||||||
Protein Properties | Length: 255aa MW: 27776.7 Da PI: 7.2729 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 75.9 | 4.8e-24 | 49 | 110 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59 +Dg++WrKYGqK+++g+ fpr YYrCt++ gC++ k+ve+ + dp ++ ++Y+++H+++ Traes_3B_8B0D448D8.1 49 HDGFQWRKYGQKVIRGNAFPRCYYRCTYHqdhGCSASKHVEQHnSADPPLFRVVYTNDHTCS 110 7***************************98999*******986157**************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.2E-24 | 33 | 110 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.37E-22 | 41 | 110 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.4E-34 | 48 | 111 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 19.657 | 50 | 107 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.9E-24 | 50 | 109 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MRGSNMLSSS GSNKRALQQD CSGGSHAQEH TKRKSRIGMR TDYTYAPYHD GFQWRKYGQK 60 VIRGNAFPRC YYRCTYHQDH GCSASKHVEQ HNSADPPLFR VVYTNDHTCS GAAASASDYM 120 ASSMQIQQIA DASLRKADTE AERPPRPQQP RSGGSYAAAI KEEKDAIVSS LLTVIRGSCD 180 VVKSDTAHEG YSSASLATNC YAMSSPSVAG GSREGSSSSS VSPVVLPAPD DMGLGLDFMV 240 ESHWFEPLDL GWFVE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ806391 | 1e-173 | JQ806391.1 Hordeum vulgare WRKY transcript factor 53 (WRKY53) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020186013.1 | 1e-162 | probable WRKY transcription factor 63 | ||||
TrEMBL | A0A3B6FVE2 | 0.0 | A0A3B6FVE2_WHEAT; Uncharacterized protein | ||||
STRING | Traes_3B_8B0D448D8.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11814 | 31 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40740.1 | 2e-18 | WRKY DNA-binding protein 55 |