PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_3B_5DC4D39A6.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 736aa MW: 80322.6 Da PI: 9.7077 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.3 | 1.2e-12 | 582 | 628 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI +Lq Traes_3B_5DC4D39A6.1 582 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYITDLQ 628 799***********************66......*****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 1.9E-49 | 178 | 363 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 16.806 | 578 | 627 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.62E-18 | 581 | 643 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.31E-14 | 581 | 632 | No hit | No description |
Pfam | PF00010 | 4.0E-10 | 582 | 628 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.8E-18 | 582 | 640 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-16 | 584 | 633 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 736 aa Download sequence Send to blast |
SRSSSGSPPL PRNPLAHQRK LHTTTVESHH PPSLPPSPTR TPRRAPRPET RGPHPLREEG 60 EGERAEPPLG ARVRAREDPG FSPSRLRRQR SGLGVAGLPA LDFASPLPIR ARDPRSGLMV 120 MKMEVEEDGA NGGNGGAWTE EDRDLSTTVL GRDAFAYLTK GGGTISEGLV AASSPVDLQN 180 KLQELIESEH PGAGWNYAIF WQLSRTKSGD LVLGWGDGSC REPNDAELAA AASAGNDDAK 240 QRMRKRVLQR LHKAFGGADE EDYAPTIGQV TDTEMFFLAS MYFAFPRRAG APGQVFAAGL 300 PLWVPNSERN VFPANYCYRG YLASTAGFRT ILLVPFETGV LELGSMQQVA ESSDTLQTIK 360 SVFAGTGGNK DIIPSREGNG HIERSPGLAK IFGKDLNLGR SSAGPVIGAS KVDERPWEQR 420 TAGGGSSLLP NVQKGLQSFT WSQARGLNSH QQKFGNGILI VSNEATHGNN RAADSSTTTQ 480 FQLQKAPQLQ KLPLLQKPPQ LVKPLQMVNQ QQLQPQAPRQ IDFSAGTSSK SGVLVTRAAV 540 LDGDSSEVNG LCKEEGTTPV IEDRRPRKRG RKPANGREEP LNHVEAERQR REKLNQRFYA 600 LRAVVPNISK MDKASLLGDA IAYITDLQKK LKDMETERER FLESGMVDPR ERAPRPEVDI 660 QVVQDEVLVR VMSPLENHPV KKVFEAFEEA DVRVGESKLT GNNGTVVHSF IIKCPGSEQK 720 TREKVIAAMS RAMSSV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 2e-28 | 576 | 638 | 2 | 64 | Transcription factor MYC2 |
5gnj_B | 2e-28 | 576 | 638 | 2 | 64 | Transcription factor MYC2 |
5gnj_E | 2e-28 | 576 | 638 | 2 | 64 | Transcription factor MYC2 |
5gnj_F | 2e-28 | 576 | 638 | 2 | 64 | Transcription factor MYC2 |
5gnj_G | 2e-28 | 576 | 638 | 2 | 64 | Transcription factor MYC2 |
5gnj_I | 2e-28 | 576 | 638 | 2 | 64 | Transcription factor MYC2 |
5gnj_M | 2e-28 | 576 | 638 | 2 | 64 | Transcription factor MYC2 |
5gnj_N | 2e-28 | 576 | 638 | 2 | 64 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 563 | 571 | RRPRKRGRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK376820 | 0.0 | AK376820.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3137B23. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020154206.1 | 0.0 | transcription factor bHLH13-like | ||||
Refseq | XP_020154207.1 | 0.0 | transcription factor bHLH13-like | ||||
TrEMBL | A0A453EJ41 | 0.0 | A0A453EJ41_AEGTS; Uncharacterized protein | ||||
STRING | Traes_3B_5DC4D39A6.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5174 | 38 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01260.3 | 2e-61 | bHLH family protein |