PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_3B_30A3E17C6.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Protein Properties

Length: 366aa MW: 40882 Da PI: 5.6271

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_3B_30A3E17C6.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	57.7	2.1e-18	18	108	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k +++s+v +l lp +f+++h k +++ ++lede+g ++ k+ + +++ l++GW++F+ +++k+gD+vvF+l+++ + Traes_3B_30A3E17C6.1 18 FVKHMLHSHVVHGFWLGLPSDFCNKHLPK--KDTAIVLEDEDGHNYDAKY--LGAKQG--LSAGWRGFAINHDIKVGDVVVFQLVSSAK 100 899******************999533..5679***********..888877..9********************987666 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 f +v ++r+ Traes_3B_30A3E17C6.1 101 F--KVYILRA 108 6..9999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	4.2E-21	12	109	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	5.49E-24	13	109	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.35E-25	16	107	No hit	No description
Pfam	PF02362	1.1E-16	18	108	IPR003340	B3 DNA binding domain
SMART	SM01019	7.2E-20	18	109	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	13.535	18	109	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MERAEEVLVK LPAEHPSFVK HMLHSHVVHG FWLGLPSDFC NKHLPKKDTA IVLEDEDGHN 60 YDAKYLGAKQ GLSAGWRGFA INHDIKVGDV VVFQLVSSAK FKVYILRANN YTTTDGAIGL 120 LCLEAGKEKI PKEESSNDVK SEAGKEKIPK EESSNDVKSE KKPKVAWSDS SNLASESITD 180 GIKFSDTAID FDDVNDFSSF SIVYDGLVID CEFPDHLRKT YYELCCAQKS FLHKELLKGL 240 NLTLVVGAIM ETIDIAEGIR ACKARAPSCK HFVVWKKNLQ ALKLLGMNVD FLLKRVDDLL 300 SLPAPPRVPA EVKLERAHTV AKIKEVESRI SSVKDTLEEI DMEMEEMESS AKMVDEMMQL 360 LATAPW

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MERAEEVLVK LPAEHPSFVK HMLHSHVVHG FWLGLPSDFC NKHLPKKDTA IVLEDEDGHN  60
YDAKYLGAKQ GLSAGWRGFA INHDIKVGDV VVFQLVSSAK FKVYILRANN YTTTDGAIGL  120
LCLEAGKEKI PKEESSNDVK SEAGKEKIPK EESSNDVKSE KKPKVAWSDS SNLASESITD  180
GIKFSDTAID FDDVNDFSSF SIVYDGLVID CEFPDHLRKT YYELCCAQKS FLHKELLKGL  240
NLTLVVGAIM ETIDIAEGIR ACKARAPSCK HFVVWKKNLQ ALKLLGMNVD FLLKRVDDLL  300
SLPAPPRVPA EVKLERAHTV AKIKEVESRI SSVKDTLEEI DMEMEEMESS AKMVDEMMQL  360
LATAPW

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	0.0	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020189684.1	0.0	B3 domain-containing protein Os01g0234100-like
Swissprot	Q0JP99	1e-156	Y1341_ORYSJ; B3 domain-containing protein Os01g0234100
TrEMBL	A0A446PLW5	0.0	A0A446PLW5_TRITD; Uncharacterized protein
STRING	Traes_3B_30A3E17C6.2	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6080	23	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	5e-37	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]