PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3AS_E0E90B815.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 485aa    MW: 53916.4 Da    PI: 8.658
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3AS_E0E90B815.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.57.6e-16371161296
                            HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                     B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                             ++ +v+p kf++++gg+   s+t+ le+++g  +++k+  +k  +++vl+  GW+ Fv+a+g++e+D+++F+++++s+fe  v v
  Traes_3AS_E0E90B815.2  37 FRHGMVIPYKFIDHFGGN--ISRTIELESRNGSMYTIKV--SKLMNETVLRwHGWEAFVDAHGVEENDSLLFRHIEKSRFE--VLV 116
                            4567********888999..889****************..999999999999*********************9989995..444 PP
2B345.21.7e-14259348895
                            -HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE-.SS.SEE. CS
                     B3   8 sdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkld.gr.sefe 91 
                            +++++++ +v+pk faee    ++es+ ltl+   ++++W   +++rk ++++vlt + W +F ++ng++egD +vF+ + g+ ++ +
  Traes_3AS_E0E90B815.2 259 KMSTQNRTIVIPKLFAEERF--PRESQNLTLQRpGKSKKWHPWFSIRKDRCGHVLTgSRWVGFLRDNGVQEGDLCVFQPVqGTgTRSK 344
                            566777889*******9997..457779***995566*******99******9998678*******************6624445555 PP

                            .EEE CS
                     B3  92 lvvk 95 
                            ++v+
  Traes_3AS_E0E90B815.2 345 FTVH 348
                            5555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.49E-2022122IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-1726121IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.40626120IPR003340B3 DNA binding domain
CDDcd100174.16E-1727118No hitNo description
SMARTSM010192.6E-1128120IPR003340B3 DNA binding domain
PfamPF023626.2E-1437116IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-17247351IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.02E-15250350IPR015300DNA-binding pseudobarrel domain
CDDcd100171.89E-16252350No hitNo description
PROSITE profilePS5086311.321252353IPR003340B3 DNA binding domain
SMARTSM010191.8E-6254353IPR003340B3 DNA binding domain
PfamPF023627.8E-13255349IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MAGLASQVKR YCDCYKRYAG HLDGKMRCFR GRMTANFRHG MVIPYKFIDH FGGNISRTIE  60
LESRNGSMYT IKVSKLMNET VLRWHGWEAF VDAHGVEEND SLLFRHIEKS RFEVLVLDSD  120
DCEKVLPSAG IKVASCNVQE SGSMDYIDIS SSSGDDTTRS PGSQRFAACE RGDSSHPRKT  180
ALKNDSSSEE DSGEDTDAAE EHSEHELSFE LDDIRQTPCA GRAYVLSRCG HLSGAQEERV  240
TRFLQDVRAE TPVFVAIMKM STQNRTIVIP KLFAEERFPR ESQNLTLQRP GKSKKWHPWF  300
SIRKDRCGHV LTGSRWVGFL RDNGVQEGDL CVFQPVQGTG TRSKFTVHLL HESLGASGST  360
GPKKRVGCTT THGNTRVNSG APERATTAHG HGATTIAKAA PPTPTTLRVN KQHDDGCNHG  420
RERARQQPKP LRPYILSSTA RLTEEQEREV DRTARAIGSR VPAYVSVMNR SSVGVGNGIY  480
NVTIS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188321.10.0B3 domain-containing protein Os03g0620400-like
TrEMBLA0A3B6ELM40.0A0A3B6ELM4_WHEAT; Uncharacterized protein
TrEMBLA0A446N9T30.0A0A446N9T3_TRITD; Uncharacterized protein
STRINGTraes_3AS_E0E90B815.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.14e-11B3 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]