PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3AS_965E2F790.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 307aa    MW: 33574.7 Da    PI: 6.7188
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3AS_965E2F790.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.82.6e-135195347
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                           +WT+eE+ l++ + ++lG+g+W+ I+r +   Rt+ q+ s+ qky
  Traes_3AS_965E2F790.1 51 PWTEEEHRLFLLGLQKLGKGDWRGISRSFVVSRTPTQVASHAQKY 95
                           8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.64543100IPR017930Myb domain
SuperFamilySSF466898.97E-1648101IPR009057Homeodomain-like
SMARTSM007172.2E-104898IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-115094IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-175099IPR006447Myb domain, plants
CDDcd001672.05E-95196No hitNo description
PfamPF002496.0E-115195IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
GNKAKSSWFT SGSDSNDDFS FLKCTWASLL RYVIIVSAAS NHRPICASGT PWTEEEHRLF  60
LLGLQKLGKG DWRGISRSFV VSRTPTQVAS HAQKYFIRQT NFSRRKRRSS LFDMVPEMPM  120
DESPDGAEEF TLCSTQDETS SSNKLSLFHL GRQKEAECDK DLPTLQLRQH EESEYGGPSL  180
EAPDLEMNNG VSFKAASVST VPAFYPSLLP VPLTLWPANV SNVEAANASH EVLKPTPVNL  240
KEAIKADEVV SMSKLSIGGG TSGSMEPSAL SLQLTGPTNT RQSAFHVSPP MTRTDLSQGN  300
NSPIHAV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3716730.0AK371673.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2139L02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020189174.10.0transcription factor MYB1R1-like
TrEMBLA0A446N6P10.0A0A446N6P1_TRITD; Uncharacterized protein
STRINGTraes_3AS_965E2F790.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19393791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.11e-42MYB_related family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]