PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3AS_62742A0471.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 264aa    MW: 28977.1 Da    PI: 8.7525
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3AS_62742A0471.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.47.3e-1862111255
                     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              y+GVr++  +g+WvAeIr+p   + r  r +lg+f ta eAa+a++ a+++++g
  Traes_3AS_62742A0471.1  62 AYRGVRQRT-WGKWVAEIREP---N-RgNRLWLGSFPTAVEAARAYDDAARAMYG 111
                             59****999.**********8...2.359***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.0E-1161111IPR001471AP2/ERF domain
SMARTSM003806.7E-3562125IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-2062119IPR016177DNA-binding domain
PROSITE profilePS5103221.79962119IPR001471AP2/ERF domain
PRINTSPR003671.3E-96374IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-3063120IPR001471AP2/ERF domain
CDDcd000185.77E-1963121No hitNo description
PRINTSPR003671.3E-985101IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MNRKKKVRRR STGPDSVAET IKKWKEENQK LQQENGSRKA PAKGSKKGCM AGKGGPENSN  60
CAYRGVRQRT WGKWVAEIRE PNRGNRLWLG SFPTAVEAAR AYDDAARAMY GAKARVNFSE  120
QSPDANSGCT LAPPLLTSNG ATAASHPSDG KDESESPPSL ISNGPTAALR RSDAKDESES  180
AGTVARKVKK EVSNDLRSTH EEHKTLEVSQ PKGKALHKEA NVSYDYFNVE EVLDMIIVEL  240
SADVKMEAHE EYQDGDDGFS LFSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1463118662ATERF1
3gcc_A2e-1463118662ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
118NRKKKVRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1950700.0DQ195070.1 Triticum aestivum genome A dehydration-responsive element-binding protein (Dreb1) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024314715.11e-159dehydration-responsive element-binding protein 2A isoform X4
SwissprotA2WL191e-133DRE2A_ORYSI; Dehydration-responsive element-binding protein 2A
TrEMBLA0A446N5R90.0A0A446N5R9_TRITD; Uncharacterized protein
STRINGTraes_3AS_62742A0471.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73153551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.11e-33ERF family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]