PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_3AS_475B27CF6.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 213aa MW: 22385.8 Da PI: 4.8821 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.9 | 1.1e-13 | 12 | 53 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 + ++ E+e ++ + k lG++ W+ Ia +m+ gRt++++k++w++ Traes_3AS_475B27CF6.1 12 PISKREEETIISLQKSLGNR-WSVIAGKMP-GRTDNEIKNYWNS 53 56889***************.*********.***********95 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-21 | 1 | 58 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.94E-13 | 1 | 60 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.784 | 5 | 59 | IPR017930 | Myb domain |
SMART | SM00717 | 2.2E-12 | 9 | 57 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.43E-10 | 12 | 52 | No hit | No description |
Pfam | PF00249 | 3.1E-11 | 12 | 53 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 213 aa Download sequence Send to blast |
MNYLRPDLKK EPISKREEET IISLQKSLGN RWSVIAGKMP GRTDNEIKNY WNSRIRKRQT 60 LSTGGGKGDS GLAKQGDLPA ADDKASVLAG PRGKEPVSSM ASGATVPPVP ARFPMFACQL 120 LGGGGGAAAI AAAGTTESTT THQNNGAGSE SDAASVGNGS AAGDDGREGH YYYCAVDGDI 180 DMVHLMSFDD LLEYPAGDLL MDAWDQNGLY STN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020183575.1 | 1e-124 | myb-related protein 305-like | ||||
TrEMBL | A0A3B6EF32 | 1e-154 | A0A3B6EF32_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446N5J6 | 1e-154 | A0A446N5J6_TRITD; Uncharacterized protein | ||||
STRING | Traes_3AS_475B27CF6.1 | 1e-156 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8703 | 25 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G38620.1 | 3e-23 | myb domain protein 4 |
Publications ? help Back to Top | |||
---|---|---|---|
|