PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_3AS_413E4DDF6.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C2H2 | ||||||||
Protein Properties | Length: 315aa MW: 36141.2 Da PI: 7.115 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.4 | 0.00011 | 109 | 131 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ C+++++++ +L Hi+ H Traes_3AS_413E4DDF6.1 109 SCSVCSRVYPTSRLLSIHISEaH 131 6******************9888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 11 | 81 | 106 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 83 | 106 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 5 | 108 | 131 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 110 | 131 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.2 | 146 | 171 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 148 | 171 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MQQNPAEAME ASAPSEAEAP KDAGPWLGFW EVSRRRLTPD DPFFAAGDME RELLAKHVAL 60 DLSDDDRYQL EKMDVASVSM VCCPIAGCGA HLDCLEDFED HYSTRHTASC SVCSRVYPTS 120 RLLSIHISEA HDSFFQAKVA RGFPMYECLV EGCGEKLKTY KSRQQHLVDK HQFPNSFEFF 180 KRAQPSQRHR QKYHHRRQTA YKGEETRDTV MDVDGKNPRQ SKPRYRPKQR DHKEPKENEH 240 GHKESKDNEH HEKEAKESDM EVEQKIDELS SAVSRLSTAD SVPSSITFGH RRARGLTFVP 300 RSIRQNKQVS QPEAN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK369462 | 0.0 | AK369462.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2091M16. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020201569.1 | 0.0 | zinc finger protein 511 | ||||
TrEMBL | A0A3B6EF22 | 0.0 | A0A3B6EF22_WHEAT; Uncharacterized protein | ||||
STRING | Traes_3AS_413E4DDF6.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10911 | 26 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14140.1 | 1e-90 | zinc ion binding;nucleic acid binding;zinc ion binding |
Publications ? help Back to Top | |||
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