PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_3AS_16C02FAE7.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Protein Properties

Length: 374aa MW: 41466.2 Da PI: 5.5189

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_3AS_16C02FAE7.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	58	1.7e-18	18	108	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k +++s+v +l lp +f+++h k +++ ++lede+g ++ k+ + +++ l++GW++F+ +g+k+gD+vvF+l+++ Traes_3AS_16C02FAE7.2 18 FVKYMLHSHVVHGFWLGLPSDFCNKHLPK--KDTAIVLEDEDGHNYDAKY--LGAKQG--LSAGWRGFAINHGIKVGDVVVFQLVSSA 99 8999*****************999533..5679***********..888877..9********************98766 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 +f +v ++r+ Traes_3AS_16C02FAE7.2 100 KF--KVYILRA 108 66..9999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	5.1E-21	12	109	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	4.71E-24	13	109	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	7.14E-25	16	107	No hit	No description
Pfam	PF02362	7.4E-17	18	108	IPR003340	B3 DNA binding domain
SMART	SM01019	2.0E-20	18	109	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	13.902	18	109	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
MERAEEVLVK LPAEHPSFVK YMLHSHVVHG FWLGLPSDFC NKHLPKKDTA IVLEDEDGHN 60 YDAKYLGAKQ GLSAGWRGFA INHGIKVGDV VVFQLVSSAK FKVYILRANN FTTTDGALGL 120 LCLEDGKEKI PKEESSNDVK SEAGKENIPK EESSNDVKSE AGKEKILKEE SSNDVKSEAV 180 KEKIPKEESS IDVKSEEKPK VAQSDSSNLA SESITDGIKF SDTVIDFDNV KDFSSFSIVV 240 DGLVIDCEFP DHLRETYYEL CCAQKSFLHK ELLKGLNLTL VVGAIMETID IAEGIRACKA 300 RTPSRRDFVV WKNLQALKLL GMNVDFLLKR VDDLLSLPAR PRAPAEVKLE RARTVAKIKA 360 VVQDFECEGH SGGD

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

MERAEEVLVK LPAEHPSFVK YMLHSHVVHG FWLGLPSDFC NKHLPKKDTA IVLEDEDGHN  60
YDAKYLGAKQ GLSAGWRGFA INHGIKVGDV VVFQLVSSAK FKVYILRANN FTTTDGALGL  120
LCLEDGKEKI PKEESSNDVK SEAGKENIPK EESSNDVKSE AGKEKILKEE SSNDVKSEAV  180
KEKIPKEESS IDVKSEEKPK VAQSDSSNLA SESITDGIKF SDTVIDFDNV KDFSSFSIVV  240
DGLVIDCEFP DHLRETYYEL CCAQKSFLHK ELLKGLNLTL VVGAIMETID IAEGIRACKA  300
RTPSRRDFVV WKNLQALKLL GMNVDFLLKR VDDLLSLPAR PRAPAEVKLE RARTVAKIKA  360
VVQDFECEGH SGGD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	0.0	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020189684.1	0.0	B3 domain-containing protein Os01g0234100-like
Swissprot	Q0JP99	1e-134	Y1341_ORYSJ; B3 domain-containing protein Os01g0234100
TrEMBL	A0A3B6EEP6	0.0	A0A3B6EEP6_WHEAT; Uncharacterized protein
TrEMBL	A0A446NB13	0.0	A0A446NB13_TRITD; Uncharacterized protein
STRING	Traes_3AS_16C02FAE7.2	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6080	23	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	4e-37	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]