PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_3AL_D6813CBDE.1 | ||||||||
Common Name | TRAES_3BF026400090CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 92aa MW: 10846.5 Da PI: 10.4777 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.7 | 1.1e-19 | 20 | 73 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ +++keq + Lee F+ n+++s +++e LA kl+L rqV vWFqNrRa+ k Traes_3AL_D6813CBDE.1 20 KKLRLSKEQSRLLEESFRLNHTLSPKQKEALAIKLKLRPRQVEVWFQNRRARTK 73 67789***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 108.7 | 4.1e-35 | 20 | 91 | 2 | 73 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydal 73 kk+rlskeq++lLEesF+ +++L+p++K++la +L+l+prqv+vWFqnrRARtk+k++E+++e+Lkr++ +l Traes_3AL_D6813CBDE.1 20 KKLRLSKEQSRLLEESFRLNHTLSPKQKEALAIKLKLRPRQVEVWFQNRRARTKLKHTEMECEYLKRCFGSL 91 9*******************************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-18 | 6 | 73 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.15E-19 | 12 | 75 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.86 | 15 | 75 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.6E-16 | 17 | 79 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.93E-13 | 18 | 76 | No hit | No description |
Pfam | PF00046 | 6.2E-17 | 19 | 73 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 50 | 73 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 92 aa Download sequence Send to blast |
MGGVEEDEEE RGAGGPHRPK KLRLSKEQSR LLEESFRLNH TLSPKQKEAL AIKLKLRPRQ 60 VEVWFQNRRA RTKLKHTEME CEYLKRCFGS LT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. | |||||
UniProt | Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF145727 | 1e-112 | AF145727.1 Oryza sativa homeodomain leucine zipper protein (Oshox3) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020154762.1 | 9e-60 | homeobox-leucine zipper protein HOX3 | ||||
Swissprot | Q0JKX1 | 3e-58 | HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3 | ||||
Swissprot | Q9XH38 | 3e-58 | HOX3_ORYSI; Homeobox-leucine zipper protein HOX3 | ||||
TrEMBL | A0A3B6EKF5 | 5e-59 | A0A3B6EKF5_WHEAT; Uncharacterized protein | ||||
STRING | Traes_3AL_D6813CBDE.1 | 1e-60 | (Triticum aestivum) | ||||
STRING | Traes_3B_436FBF290.1 | 1e-59 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6826 | 35 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01430.1 | 7e-39 | homeobox-leucine zipper protein 17 |
Publications ? help Back to Top | |||
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