PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3AL_A30A3C355.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 263aa    MW: 29989.3 Da    PI: 10.2624
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3AL_A30A3C355.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B380.61.5e-2527128199
                            EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                            f+k+lt sd++++g +++p++ ae++      +++   s++l+ +d++g +W++++iyr++++r++lt+GW++Fv+ ++L +gD v+F
  Traes_3AL_A30A3C355.1  27 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyQQVR-PSQELVAKDLHGAKWRFRHIYRGQPRRHLLTTGWSSFVNKKKLVSGDAVLF 113
                            99****************************975554.4569*********************************************** PP

                            EE-SSSEE..EEEEE-S CS
                     B3  83 kldgrsefelvvkvfrk 99 
                               + +++el+++v+r+
  Traes_3AL_A30A3C355.1 114 L--RGDDGELRLGVRRA 128
                            *..3489999****996 PP
2Auxin_resp112.34.8e-37154234283
             Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                            a++++++svF+++YnPra++seF+v+++k++k+l++++++GmRfk+++ +ed++err sG+++g++++dp+rW++SkW+sL+
  Traes_3AL_A30A3C355.1 154 ANSLKHRSVFHICYNPRAAASEFIVPYWKFLKSLNRPFCIGMRFKIQYGSEDVNERR-SGIITGINEVDPIRWTGSKWKSLQ 234
                            68899****************************************************.9*********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.57E-4511166IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.8E-4023128IPR015300DNA-binding pseudobarrel domain
CDDcd100172.19E-2225127No hitNo description
PfamPF023621.7E-2327128IPR003340B3 DNA binding domain
PROSITE profilePS5086313.21127129IPR003340B3 DNA binding domain
SMARTSM010193.7E-2427129IPR003340B3 DNA binding domain
PfamPF065072.0E-30154234IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MGGGRFEGED DMEDGDGERK SRMLHMFCKT LTASDTSTHG GFSVPRRAAE DCFPPLDYQQ  60
VRPSQELVAK DLHGAKWRFR HIYRGQPRRH LLTTGWSSFV NKKKLVSGDA VLFLRGDDGE  120
LRLGVRRAIQ LKNEALLKSF NSNSSKIHTL SAMANSLKHR SVFHICYNPR AAASEFIVPY  180
WKFLKSLNRP FCIGMRFKIQ YGSEDVNERR SGIITGINEV DPIRWTGSKW KSLQVGILVD  240
CIKHLGLSNS ERHYLRPALQ YFG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A6e-7327235158368Auxin response factor 5
4ldy_A5e-7324235121333Auxin response factor 1
4ldy_B5e-7324235121333Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3548060.0AK354806.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1011H16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020175130.11e-168auxin response factor 3-like
SwissprotQ5JMM11e-133ARFC_ORYSJ; Auxin response factor 3
TrEMBLA0A446NPL80.0A0A446NPL8_TRITD; Auxin response factor
STRINGTraes_3AL_A30A3C355.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51132756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-104ARF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Song X, et al.
    Rice RNA-dependent RNA polymerase 6 acts in small RNA biogenesis and spikelet development.
    Plant J., 2012. 71(3): p. 378-89
    [PMID:22443269]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]