PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3AL_891566958.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 76aa    MW: 8599.84 Da    PI: 11.5057
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3AL_891566958.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding301.2e-097441047
                           HHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding 10 ellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                            l++ + k +G+g+W++I+r +  +Rt+ q+ s+ qky
  Traes_3AL_891566958.1  7 RLFLLGLKTYGKGDWRKISRNFVRTRTPTQVASHAQKY 44
                           5789999******************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.502149IPR017930Myb domain
TIGRFAMsTIGR015571.1E-11547IPR006447Myb domain, plants
SuperFamilySSF466898.58E-12649IPR009057Homeodomain-like
CDDcd001671.53E-7745No hitNo description
Gene3DG3DSA:1.10.10.609.4E-7844IPR009057Homeodomain-like
PfamPF002493.0E-7844IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 76 aa     Download sequence    Send to blast
MPCSLARLFL LGLKTYGKGD WRKISRNFVR TRTPTQVASH AQKYFIRLSS GTARRSSIHD  60
ITTVHLTDDQ PPSPSQ
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU8570451e-114KU857045.1 Triticum aestivum GID2-A1 protein (gid2-A1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020200806.11e-39F-box protein GID2-like
SwissprotQ8S9H72e-30DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A446P6344e-49A0A446P634_TRITD; Uncharacterized protein
STRINGTraes_3AL_891566958.16e-50(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.12e-28Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]