PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_3AL_55A3F252C.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB_related | ||||||||
Protein Properties | Length: 214aa MW: 23072 Da PI: 7.7406 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.3 | 1.7e-13 | 53 | 97 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W++eE+ l++ + ++lG+g+W+ I+r ++Rt+ q+ s+ qk+ Traes_3AL_55A3F252C.1 53 PWSEEEHRLFLVGLEKLGKGDWRGISRSYVTTRTPTQVASHAQKF 97 8******************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.403 | 46 | 102 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.92E-17 | 47 | 103 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.2E-17 | 49 | 101 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 8.5E-10 | 50 | 100 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.7E-10 | 50 | 93 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.27E-10 | 53 | 98 | No hit | No description |
Pfam | PF00249 | 8.7E-11 | 53 | 96 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
QLAVAPSSIV SPSSSSSSSV LLSIDEGLER ASNGYLSDGP HGRLVQERKK GVPWSEEEHR 60 LFLVGLEKLG KGDWRGISRS YVTTRTPTQV ASHAQKFFLR QSSMGKKKRR SSLFDMVPIC 120 ENGIRVSEPL TNNSGDASTS LPRYKSPDMA SIDLNSTQED DMAMAGVPLL SASPRAPFPA 180 VLMEQPPHGH GHGHHCSPLE LELGMSLSPP SIGT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 105 | 109 | KKKRR |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF951923 | 0.0 | JF951923.1 Aegilops speltoides clone TaMYB40 MYB-related protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020184061.1 | 1e-127 | transcription factor SRM1-like | ||||
TrEMBL | A0A3B6EGN5 | 1e-154 | A0A3B6EGN5_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446NHE0 | 1e-154 | A0A446NHE0_TRITD; Uncharacterized protein | ||||
STRING | Traes_3AL_55A3F252C.1 | 1e-155 | (Triticum aestivum) | ||||
STRING | Traes_3B_AE7851A5F.1 | 1e-154 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4932 | 30 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47390.1 | 3e-40 | MYB_related family protein |
Publications ? help Back to Top | |||
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