PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_3AL_3160E1F30.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 62aa MW: 7274.21 Da PI: 9.7624 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 106.3 | 1.6e-33 | 2 | 57 | 3 | 58 |
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 Dgy+WrKYGqK +k++++prsYY+Ctsa+C++kk+ve+s++dp+++++tYeg+H h Traes_3AL_3160E1F30.1 2 DGYRWRKYGQKFIKNNPHPRSYYKCTSARCSAKKHVEKSTDDPEMLIVTYEGSHLH 57 9*****************************************************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 28.403 | 1 | 60 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.2E-34 | 2 | 59 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.4E-31 | 2 | 58 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.5E-28 | 2 | 57 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.23E-27 | 2 | 59 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 62 aa Download sequence Send to blast |
MDGYRWRKYG QKFIKNNPHP RSYYKCTSAR CSAKKHVEKS TDDPEMLIVT YEGSHLHGPQ 60 TT |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-23 | 2 | 57 | 19 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 1e-23 | 2 | 57 | 19 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK362686 | 1e-94 | AK362686.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2009G15. | |||
GenBank | DQ863130 | 1e-94 | DQ863130.1 Hordeum vulgare WRKY transcription factor 36 (WRKY36) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020148292.1 | 2e-40 | WRKY transcription factor WRKY24-like isoform X3 | ||||
Swissprot | Q9C983 | 3e-24 | WRK57_ARATH; Probable WRKY transcription factor 57 | ||||
TrEMBL | A0A1D5WHK3 | 1e-38 | A0A1D5WHK3_WHEAT; WRKY transcription factor 49 | ||||
TrEMBL | A0A3B6EM27 | 1e-38 | A0A3B6EM27_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446NW31 | 1e-38 | A0A446NW31_TRITD; Uncharacterized protein | ||||
TrEMBL | B2KJ86 | 1e-39 | B2KJ86_HORVU; WRKY transcription factor 36 (Fragment) | ||||
STRING | MLOC_19031.2 | 2e-39 | (Hordeum vulgare) | ||||
STRING | Traes_3AL_3160E1F30.1 | 6e-41 | (Triticum aestivum) | ||||
STRING | TRIUR3_34281-P1 | 5e-39 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13144 | 26 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69310.2 | 1e-26 | WRKY DNA-binding protein 57 |
Publications ? help Back to Top | |||
---|---|---|---|
|