PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2DS_AD8820C42.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | WRKY | ||||||||
Protein Properties | Length: 229aa MW: 24494.4 Da PI: 11.3255 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 26.1 | 1.8e-08 | 166 | 185 | 2 | 21 |
--SS-EEEEEEE--TT-SS- CS WRKY 2 dDgynWrKYGqKevkgsefp 21 dDg++WrKYGqK++ g+++p Traes_2DS_AD8820C42.1 166 DDGHSWRKYGQKDILGAKHP 185 7*****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 8.57 | 160 | 185 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 5.6E-7 | 161 | 185 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.45E-6 | 164 | 186 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.5E-6 | 166 | 186 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MARLPASHHQ STTSSPAPRD REISLITCSL PSFSSANRTC SSVSAAMESV EGNGTGRGNL 60 QLVVSELCRV QELVRQLELH LHAPDASIDL CRALTAEIFA LTDRSIGFVA AAHFPDAPTT 120 PSSTSSSLSG VSDQPFRTNT KKRKATARWT SQVRVSAAGG AEGPGDDGHS WRKYGQKDIL 180 GAKHPXLLPL HPPQLAGLPR HQAGAARRPG PRALRRRLPR PAHLQANGR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ334401 | 0.0 | DQ334401.1 Triticum aestivum WRKY transcription factor WRKY1B (WRKY1B) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020187901.1 | 6e-95 | probable WRKY transcription factor 41 | ||||
TrEMBL | A0A1D5UYQ9 | 1e-128 | A0A1D5UYQ9_WHEAT; Uncharacterized protein | ||||
STRING | Traes_2DS_AD8820C42.1 | 1e-164 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1086 | 38 | 131 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11070.2 | 2e-07 | WRKY family protein |
Publications ? help Back to Top | |||
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