PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_2DS_896F9F33B.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Protein Properties

Length: 210aa MW: 24409.6 Da PI: 6.972

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_2DS_896F9F33B.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	52.5	8.9e-17	122	202	11	99
HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ++ l +p +f eh + ++ ++l de+ ++++v++ r +s++ l +GW+eF+ +n+L egD +vF+l++r f +v +fr Traes_2DS_896F9F33B.1 122 QSLTSLHIPAQFSMEHLPD--HGMRMVLVDEEEEEFKVRY--RPHSSS--LVAGWSEFAVDNELVEGDCLVFQLIKRALF--KVYIFR 201 4445589***9999533..6789***********..999988..889********************98888..999999 PP S CS B3 99 k 99 + Traes_2DS_896F9F33B.1 202 A 202 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	5.1E-22	109	203	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	3.3E-21	110	203	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	11.829	112	203	IPR003340	B3 DNA binding domain
CDD	cd10017	1.69E-22	114	201	No hit	No description
SMART	SM01019	4.0E-16	116	203	IPR003340	B3 DNA binding domain
Pfam	PF02362	4.2E-14	120	202	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MAEANSYEEQ RRRQVEENKR KLEELRLHHL SAAVREAAVK PRLKRKAPKP RDAADDAPPR 60 RSGRIATLPE QPDYRDNVKL GTRKPWQQKE VKPDHAYAIA KAEELQDELG SDYPTFVKPM 120 PQSLTSLHIP AQFSMEHLPD HGMRMVLVDE EEEEFKVRYR PHSSSLVAGW SEFAVDNELV 180 EGDCLVFQLI KRALFKVYIF RASSYYENDH

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK374346	0.0	AK374346.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3061L19.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020158478.1	1e-153	B3 domain-containing protein Os06g0194400-like
Swissprot	Q69V36	2e-71	Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBL	W5C6M2	1e-153	W5C6M2_WHEAT; Uncharacterized protein
STRING	Traes_2DS_896F9F33B.1	1e-154	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1756	38	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	5e-29	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]