PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DS_85FE89BC5.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 109aa    MW: 12068.6 Da    PI: 6.7775
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DS_85FE89BC5.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM118.18.4e-3713105194
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                            lppGfrFhPtdeel+ +yL++++++ ++++  +i++vdiyk++PwdLp+++  ++ ewyfFs+rd+ky++g r+nra+ sgyWkatg+
  Traes_2DS_85FE89BC5.1  13 LPPGFRFHPTDEELILHYLRNRAAAAPCPV-PIIADVDIYKFDPWDLPSQAVYGDCEWYFFSPRDRKYPNGIRPNRAAGSGYWKATGT 99 
                            79****************************.88***************76667789******************************** PP

                    NAM  89 dkevls 94 
                            dk++++
  Traes_2DS_85FE89BC5.1 100 DKPIHD 105
                            ****87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.84E-449105IPR003441NAC domain
PROSITE profilePS5100540.91413109IPR003441NAC domain
PfamPF023652.6E-1714101IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
MAMAQGQGAA TSLPPGFRFH PTDEELILHY LRNRAAAAPC PVPIIADVDI YKFDPWDLPS  60
QAVYGDCEWY FFSPRDRKYP NGIRPNRAAG SGYWKATGTD KPIHDAATG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-4811033105Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family associated with the grain protein content (GPC). Sequences of the 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269|PubMed:20005003}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT7834501e-153KT783450.1 Triticum aestivum NAC transcription factor 29 (NAC29) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020161118.14e-75protein ATAF2-like
SwissprotD2SMN41e-52NAMB1_HORVS; NAC transcription factor NAM-B1
TrEMBLA0A1D5UXV12e-74A0A1D5UXV1_WHEAT; Uncharacterized protein
STRINGTraes_2DS_85FE89BC5.12e-76(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123736123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.13e-46NAC-like, activated by AP3/PI
Publications ? help Back to Top
  1. Jamar C, et al.
    NAM-1gene polymorphism and grain protein content in Hordeum.
    J. Plant Physiol., 2010. 167(6): p. 497-501
    [PMID:20005003]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]