PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2DS_6DAFEC37F.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | GRAS | ||||||||
Protein Properties | Length: 64aa MW: 7042.85 Da PI: 4.7232 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 52.8 | 7.4e-17 | 1 | 63 | 268 | 331 |
GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplse 331 +dsle+++p++s+er +Er gr+iv++v+c +e+ er+et++ W +rl++aGF+pvp+se Traes_2DS_6DAFEC37F.1 1 MDSLEESFPKTSNERLALERG-AGRAIVDLVSCPASESMERRETAAAWARRLRSAGFSPVPFSE 63 59*******************.****************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 2.6E-14 | 1 | 63 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 11.86 | 1 | 64 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 64 aa Download sequence Send to blast |
MDSLEESFPK TSNERLALER GAGRAIVDLV SCPASESMER RETAAAWARR LRSAGFSPVP 60 FSED |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_B | 7e-21 | 1 | 64 | 312 | 375 | Protein SHORT-ROOT |
5b3h_E | 7e-21 | 1 | 64 | 312 | 375 | Protein SHORT-ROOT |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification (By similarity). {ECO:0000250}. | |||||
UniProt | Transcription factor required for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification. {ECO:0000269|PubMed:17446396}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK370979 | 4e-91 | AK370979.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2121H05. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015694703.1 | 3e-35 | PREDICTED: protein SHORT-ROOT 1 | ||||
Refseq | XP_020176974.1 | 3e-35 | protein SHORT-ROOT 1 | ||||
Swissprot | A2YN56 | 3e-34 | SHR1_ORYSI; Protein SHORT-ROOT 1 | ||||
Swissprot | Q8H2X8 | 4e-34 | SHR1_ORYSJ; Protein SHORT-ROOT 1 | ||||
TrEMBL | A0A0A9VJP7 | 1e-34 | A0A0A9VJP7_ARUDO; Uncharacterized protein | ||||
TrEMBL | A0A3B6D9Z1 | 3e-34 | A0A3B6D9Z1_WHEAT; Uncharacterized protein | ||||
STRING | Traes_2BS_736EF207B1.2 | 9e-35 | (Triticum aestivum) | ||||
STRING | Traes_2DS_6DAFEC37F.1 | 5e-38 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP51086 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37650.1 | 5e-15 | GRAS family protein |
Publications ? help Back to Top | |||
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