PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2DS_6BAF1825F.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | GeBP | ||||||||
Protein Properties | Length: 378aa MW: 41244.6 Da PI: 5.5292 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 110 | 1.6e-34 | 74 | 173 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehd 85 lfqrlw+eeDeiv+L+G+ +f+a +g+ +++ d+d fye +++++++++sksqlveK+rrLK+K++++v++ + sg +sf+++h+ Traes_2DS_6BAF1825F.1 74 LFQRLWTEEDEIVILRGFAEFTAARGTafASHQyDTDPFYEDMRRRLQLDFSKSQLVEKLRRLKRKYRNCVSRlRGSGAAFSFRSPHE 161 79************************99877778***************************************8889*********** PP DUF573 86 qkifelskkiWg 97 q ife+++ iW+ Traes_2DS_6BAF1825F.1 162 QAIFEIARNIWR 173 ***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 3.5E-31 | 75 | 172 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 378 aa Download sequence Send to blast |
MLPAGDGSSA AVAALSFTDA DGDDYSEDGD FTGAPFLEPP DPSLPDPTSS SATTLLPTGG 60 SGGQASSGGE RRPLFQRLWT EEDEIVILRG FAEFTAARGT AFASHQYDTD PFYEDMRRRL 120 QLDFSKSQLV EKLRRLKRKY RNCVSRLRGS GAAFSFRSPH EQAIFEIARN IWRPTNKHGR 180 DPSADSDDEE AVVAAAAVAA TSVPANASPN GEVKSPPGRQ RRRRRSVESP APTAPAAVPA 240 TILVQPPQPM QVQVPVSVPV KMDDSLPALP QAPMPVTVTM EGSEPLKFPV MSPQSGVVDV 300 EKNFLTPMFK EMIHAVINMG SSPFGMKLPE PPHGLPMEGE KWRNQRILEL EVYLKRIELL 360 QDQVKATLEE LKSSTPRT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK376767 | 0.0 | AK376767.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3135H11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020174717.1 | 0.0 | probable transcription factor At5g28040 | ||||
TrEMBL | W5C5R2 | 0.0 | W5C5R2_WHEAT; Uncharacterized protein | ||||
STRING | Traes_2DS_6BAF1825F.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP974 | 37 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04930.2 | 3e-35 | DNA-binding storekeeper protein-related transcriptional regulator |
Publications ? help Back to Top | |||
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