PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DS_6584E8617.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 501aa    MW: 55448.1 Da    PI: 6.9146
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DS_6584E8617.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.11.6e-18210300199
                            EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                            f+k +++s+v +  +l lp  f+++h   ++++ t++lede+g  ++ k+   + +++  l++GW++F+  +++k+gD+vvF+l+++ 
  Traes_2DS_6584E8617.2 210 FVKHMLHSHVVQGFWLGLPSGFCNKHL--PKQDATIVLEDEDGHNYDAKY--LGAKQG--LSGGWRGFAINHDIKVGDVVVFQLVRSA 291
                            899********************9995..33778****************..888877..9***********************9877 PP

                            EE..EEEEE-S CS
                     B3  89 efelvvkvfrk 99 
                            +f  +v ++r+
  Traes_2DS_6584E8617.2 292 KF--KVYILRA 300
                            77..8988886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.1E-21204301IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-24205301IPR015300DNA-binding pseudobarrel domain
CDDcd100172.64E-26208299No hitNo description
PfamPF023625.8E-17210300IPR003340B3 DNA binding domain
PROSITE profilePS5086313.408210301IPR003340B3 DNA binding domain
SMARTSM010194.3E-21210301IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MAIDQSLKRK RGRPAGGGGG SPSANKSQRD KMVMEQKMAL VHQRLALLDS ESDKDADVVP  60
TATMQDDKLA AVVVDQQPVV INFGDTDDED EYVPLRIVRP RRLDSEKEKL LDVSQTHNAQ  120
GTDTAKKKRG RLVKAQSNME QKLKLSTPRL ALVESGCSNS SKSDIDEDHV PMVAAVNCKK  180
TCSSVQGNFG SAMERAEEVL VKLPAEHPSF VKHMLHSHVV QGFWLGLPSG FCNKHLPKQD  240
ATIVLEDEDG HNYDAKYLGA KQGLSGGWRG FAINHDIKVG DVVVFQLVRS AKFKVYILRA  300
NNFTTTDGAL GLLCLEAGKE NILKEEGSND VKSKENPKVQ NDSSNPASES MKEGIRFSDT  360
AIDFDDVKNF SNFNIIVDGL VIDCKFPDHL RKTYYELCCA QESFLHKDLL KQINLTLAVG  420
VIMETTNIAE GIRACEARAS SHEDFVVWKK TLEAFELLGM NVKFLLKRID GLLSLSARPR  480
DPAEHEGYKE MKLERAHAGA K
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703063e-81HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020163751.10.0B3 domain-containing protein Os01g0234100-like isoform X1
SwissprotQ0JP991e-162Y1341_ORYSJ; B3 domain-containing protein Os01g0234100
TrEMBLA0A1D5V0950.0A0A1D5V095_WHEAT; Uncharacterized protein
STRINGTraes_2DS_6584E8617.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60802345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.13e-37B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]