PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_2DS_3B4535629.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

GRAS

Protein Properties

Length: 84aa MW: 9093.36 Da PI: 6.7894

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_2DS_3B4535629.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	45.9	9.7e-15	2	83	138	210
GRAS 138 gppslRiTgvgspesg.....skeeleetgerLakfAeelgvpfefnvlvak.rledleleeLrvkp...gEalaVnlvlql 210 ++p+l iT+v+s++++ ++ ++e+g+r++kfA+ +gvpf+f++++++ +l++l+l++L++++ +aVn++ +l Traes_2DS_3B4535629.1 2 DTPHLSITTVVSAAPSaptsaVQRVMREIGQRMEKFARLMGVPFRFRAVHHSgDLAELDLDSLDLREggaTTGIAVNCMNSL 83 58*******99888899989999********************8888**********6555568**9765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	11.96	1	84	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.4E-12	2	83	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 84 aa Download sequence Send to blast
DDTPHLSITT VVSAAPSAPT SAVQRVMREI GQRMEKFARL MGVPFRFRAV HHSGDLAELD 60 LDSLDLREGG ATTGIAVNCM NSLR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_B	2e-22	1	83	225	305	Protein SHORT-ROOT
5b3h_B	2e-22	1	83	171	251	Protein SHORT-ROOT
5b3h_E	2e-22	1	83	171	251	Protein SHORT-ROOT
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor required for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification (By similarity). {ECO:0000250}.
UniProt	Transcription factor required for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification. {ECO:0000269\|PubMed:17446396}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK370979	1e-115	AK370979.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2121H05.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020176974.1	9e-52	protein SHORT-ROOT 1
Swissprot	A2YN56	1e-41	SHR1_ORYSI; Protein SHORT-ROOT 1
Swissprot	Q8H2X8	9e-42	SHR1_ORYSJ; Protein SHORT-ROOT 1
TrEMBL	A0A3B6D9Z1	8e-52	A0A3B6D9Z1_WHEAT; Uncharacterized protein
STRING	MLOC_62665.1	2e-50	(Hordeum vulgare)
STRING	Traes_2AS_D0B21BF981.2	1e-53	(Triticum aestivum)
STRING	Traes_2DS_3B4535629.1	2e-55	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3526	37	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37650.1	3e-13	GRAS family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]