PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2DL_EFEB56850.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NAC | ||||||||
Protein Properties | Length: 82aa MW: 8889.2 Da PI: 9.9457 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 30.5 | 1e-09 | 46 | 71 | 1 | 26 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegk 26 lppGfrFhP+d+elv +yL++k++g Traes_2DL_EFEB56850.1 46 LPPGFRFHPRDHELVLDYLCHKLSGG 71 79********************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.45E-10 | 34 | 71 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 11.89 | 46 | 82 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.2E-5 | 47 | 69 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 82 aa Download sequence Send to blast |
YRPRPRPHRV RSCTSLSIQS FSFCACFSAC GKTKMSSSMS MVEARLPPGF RFHPRDHELV 60 LDYLCHKLSG GGGRGGGGGG VD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 71 | 79 | GGRGGGGGG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK370495 | 8e-56 | AK370495.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2111L02. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A446MQ58 | 4e-20 | A0A446MQ58_TRITD; Uncharacterized protein | ||||
STRING | Traes_2DL_EFEB56850.1 | 6e-53 | (Triticum aestivum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12977.1 | 2e-11 | NAC family protein |
Publications ? help Back to Top | |||
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