PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2DL_BF4319E7D.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C2H2 | ||||||||
Protein Properties | Length: 130aa MW: 13698.2 Da PI: 8.9124 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.4 | 0.00011 | 21 | 43 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +C++ F+++ L H++ H Traes_2DL_BF4319E7D.1 21 FACCYCPRKFRSSQALGGHQNAH 43 78******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.97E-5 | 20 | 47 | No hit | No description |
PROSITE profile | PS50157 | 10.055 | 21 | 48 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 23 | 43 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 130 aa Download sequence Send to blast |
LNLSLSLQRS PSSPPRFQAV FACCYCPRKF RSSQALGGHQ NAHKVQRNLA RRGRDATTAL 60 SLAAAGEQGK AAVDDDSAPL RLADPDAADA WGGGRVYPPH RQQGSGAASS GAARGNEELA 120 DEMIDLSLKL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT066826 | 7e-45 | BT066826.1 Zea mays full-length cDNA clone ZM_BFb0076P10 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003581274.2 | 6e-44 | uncharacterized protein LOC100830698 | ||||
TrEMBL | A0A3B6DEE0 | 3e-88 | A0A3B6DEE0_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453C2F0 | 3e-88 | A0A453C2F0_AEGTS; Uncharacterized protein | ||||
STRING | Traes_2DL_BF4319E7D.1 | 4e-89 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6992 | 26 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80730.1 | 1e-13 | zinc-finger protein 1 |
Publications ? help Back to Top | |||
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