PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2DL_BB8506245.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | B3 | ||||||||
Protein Properties | Length: 234aa MW: 25185.7 Da PI: 7.796 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 41.8 | 1.9e-13 | 122 | 208 | 5 | 95 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sef 90 +s+v + ++v+p++ a +k+ +s tl + +grsWe+++ ++++ l++GW++F+ +n L+ gD +vF+l+ + ++ Traes_2DL_BB8506245.2 122 VCKSHVQQPFQVVVPRSLAPFLPSKP-TS--ATL-TWQGRSWEMRF--TGGRHIQRLEAGWRSFALDNALRLGDGCVFELVgCDgEGI 203 567999999999*****996666554.33..443.3699*******..88888889***********************994444444 PP ..EEE CS B3 91 elvvk 95 ++v+ Traes_2DL_BB8506245.2 204 VFRVQ 208 45555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 7.65E-16 | 115 | 212 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 8.7E-16 | 115 | 212 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.85E-14 | 116 | 211 | No hit | No description |
SMART | SM01019 | 6.6E-4 | 118 | 213 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.421 | 118 | 213 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.6E-10 | 121 | 200 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MLFFSIPSSS QILAMAEPIP ADSSTAVTPP VYRRRNSSEE SRGISSNLFG QGNLNPFCTT 60 FFDAGGKDHG VASSAGETSQ AAISAGPPDK LDPESAKACL EVEKTQPRIL PLLGKPYFAC 120 VVCKSHVQQP FQVVVPRSLA PFLPSKPTSA TLTWQGRSWE MRFTGGRHIQ RLEAGWRSFA 180 LDNALRLGDG CVFELVGCDG EGIVFRVQVL RAEIPASIRE RAGGYTPSSA IVLD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020147560.1 | 1e-153 | B3 domain-containing protein Os04g0386900-like | ||||
Swissprot | Q7XLP4 | 7e-63 | Y4869_ORYSJ; B3 domain-containing protein Os04g0386900 | ||||
TrEMBL | A0A3B6DDM4 | 1e-171 | A0A3B6DDM4_WHEAT; Uncharacterized protein | ||||
STRING | Traes_2DL_BB8506245.2 | 1e-171 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8954 | 35 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 6e-07 | B3 family protein |
Publications ? help Back to Top | |||
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