PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_2DL_912473A86.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

MYB

Protein Properties

Length: 303aa MW: 33584.7 Da PI: 6.5095

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_2DL_912473A86.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.4	8.7e-10	1	41	6	46
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +eEd l++ v+ +G+++W++I ++ + Rt+k+c++rw + Traes_2DL_912473A86.1 1 AEEDSVLLEHVRTHGPRDWSSIRSKGALQRTGKSCRLRWVN 41 59******************998889*********87 PP
2	Myb_DNA-binding	41.6	2.9e-13	52	92	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++++E+ +++ +q+G++ W++Ia +++ gRt++++k++w Traes_2DL_912473A86.1 52 KFSADEERVVIELQAQFGNK-WARIATYLP-GRTDNDVKNFWS 92 79****************.*****.*********5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.875	1	43	IPR017930	Myb domain
Pfam	PF13921	2.6E-9	1	49	No hit	No description
SuperFamily	SSF46689	5.47E-23	1	91	IPR009057	Homeodomain-like
CDD	cd00167	4.28E-8	1	43	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.4E-15	1	49	IPR009057	Homeodomain-like
SMART	SM00717	0.008	1	45	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	19.92	44	99	IPR017930	Myb domain
SMART	SM00717	1.5E-11	49	97	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	8.7E-18	50	97	IPR009057	Homeodomain-like
Pfam	PF00249	1.5E-11	52	92	IPR001005	SANT/Myb domain
CDD	cd00167	2.56E-10	52	91	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
AEEDSVLLEH VRTHGPRDWS SIRSKGALQR TGKSCRLRWV NKLRPNLKTG CKFSADEERV 60 VIELQAQFGN KWARIATYLP GRTDNDVKNF WSTRQKRLAR LLRAPLRARP SKTRSSNTKA 120 SASSLESAMG SCQDHVPSVC NSSGGQSLAA APPMEYQDAA RISHDQMCSG FLSFEPLPLQ 180 AAAPATTEGE ASSSNAAYYQ LAPESSFYHH PYHLLEFPGL PERCSIDPGF VGASAMDDLA 240 YQELLPPLHP APMMMPFFGM EYSRDAIKVE TRDNFFDDLP PDVFDSFDQV PPPFSPSATN 300 SEL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	2e-21	2	97	33	126	MYB TRANSFORMING PROTEIN
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF099415	4e-36	AF099415.1 Zea mays clone ZmMYBIP102 R2R3MYB-domain protein mRNA, partial cds.
GenBank	AL663000	4e-36	AL663000.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0034G17, complete sequence.
GenBank	AL731613	4e-36	AL731613.5 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0065H10, complete sequence.
GenBank	AP014960	4e-36	AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBank	CP012612	4e-36	CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBank	CR855218	4e-36	CR855218.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0106P14, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020164543.1	0.0	myb-related protein Myb4-like
Swissprot	Q0JB89	1e-102	MYB58_ORYSJ; Probable transcription factor MYB58
TrEMBL	A0A1D5URT5	0.0	A0A1D5URT5_WHEAT; Uncharacterized protein
STRING	Traes_2DL_912473A86.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5700	33	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60460.1	7e-59	MYB family protein

Publications ? help Back to Top
Yilmaz A, et al. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol., 2009. 149(1): p. 171-80 [PMID:18987217] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]