PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2DL_68851ADC8.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB_related | ||||||||
Protein Properties | Length: 57aa MW: 6691.53 Da PI: 9.9481 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.5 | 2.4e-16 | 7 | 51 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++++eE+ l++ +++ lG++ W+tIa ++ gRt+++ k++w+++ Traes_2DL_68851ADC8.1 7 RGNFSEEEERLIITLHAGLGNK-WSTIATHLD-GRTDNETKNYWNTH 51 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.2E-23 | 1 | 56 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.116 | 2 | 56 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.58E-14 | 4 | 55 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-13 | 6 | 54 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-14 | 7 | 51 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.75E-9 | 9 | 52 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 57 aa Download sequence Send to blast |
LRSDIKRGNF SEEEERLIIT LHAGLGNKWS TIATHLDGRT DNETKNYWNT HIRKKLL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM156904 | 2e-52 | AM156904.1 Zea mays mRNA for transcription factor MYB2 (myb2 gene). | |||
GenBank | BT054398 | 2e-52 | BT054398.1 Zea mays full-length cDNA clone ZM_BFc0030L21 mRNA, complete cds. | |||
GenBank | HF679432 | 2e-52 | HF679432.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB26 protein. | |||
GenBank | HQ858691 | 2e-52 | HQ858691.1 Zea mays clone UT1147 ZmMYB2 transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020169251.1 | 5e-33 | myb-related protein Zm38-like | ||||
Refseq | XP_020179028.1 | 5e-33 | myb-related protein Zm38-like | ||||
Swissprot | P81393 | 7e-24 | MYB08_ANTMA; Myb-related protein 308 | ||||
TrEMBL | A0A1D5UHE8 | 3e-32 | A0A1D5UHE8_WHEAT; Uncharacterized protein | ||||
STRING | Traes_2DL_68851ADC8.1 | 8e-34 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP25499 | 5 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02940.1 | 5e-27 | myb domain protein 107 |
Publications ? help Back to Top | |||
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