PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BS_E29F278C4.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 507aa    MW: 56944.9 Da    PI: 5.3292
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BS_E29F278C4.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3491.1e-15179257185
                            EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                            f+k +++s+v +  +l lp  f+++h  + +e++t +lede+g  ++ k+   + +++  l++GW++F+  +++k+gD+vvF+l+
  Traes_2BS_E29F278C4.1 179 FVKHMLHSHVVQGFWLGLPSVFCNKHL-P-KEDTTFVLEDEDGHNYDAKY--LGAKQG--LSGGWRGFAINHDIKVGDVVVFQLV 257
                            899********************9995.3.3667****************..888877..9*********************964 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-16173257IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.08E-19174257IPR015300DNA-binding pseudobarrel domain
CDDcd100171.59E-22177257No hitNo description
PfamPF023625.7E-14179257IPR003340B3 DNA binding domain
PROSITE profilePS5086310.926179280IPR003340B3 DNA binding domain
SMARTSM010192.6E-12179271IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MVMEQKMALV HQRLALLDSE SDKDADVVPT ATMQDDKLAA VVVDQQPVVI NFGDTDDEDE  60
YVPLRIVRPR RVDSEQKKLL DVSQTHNSQD TDTAKKKRGR LVKAQSNMEQ KLNLSTPRLA  120
LVESGCSNSS KSDIDDDLVP MVAAVNCKRT FASVQGNFGS AMERAEEVLV KLPAEHPSFV  180
KHMLHSHVVQ GFWLGLPSVF CNKHLPKEDT TFVLEDEDGH NYDAKYLGAK QGLSGGWRGF  240
AINHDIKVGD VVVFQLVYIL RANNFTTTDG ALGLLCLEAG KENILKEESS NDVKSKENPK  300
VQNDSSNPAS ESMKEGIRFS DTAIDFDDVK NFSNFNIIVD GLVIDCKFPD HLRKTYYELC  360
CAQESFLHKD LLKQINLTLA VGVIMETINI AEGIRACEAR ASSHEDFVVW KKTLEAFELL  420
GMNVKFLLKR IDGLLSLSAR PRDPAEHEGY KEMKLERARA GEKMKELESR MSSVKDTLKK  480
MDVEMEEMEC SAKRTEEMLR RLATAPW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-124HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020163751.10.0B3 domain-containing protein Os01g0234100-like isoform X1
SwissprotQ0JP991e-174Y1341_ORYSJ; B3 domain-containing protein Os01g0234100
TrEMBLA0A3B6C4A20.0A0A3B6C4A2_WHEAT; Uncharacterized protein
STRINGTraes_2BS_E29F278C4.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60802345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.17e-33B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]