PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_2BS_D32231DB0.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

GRAS

Protein Properties

Length: 715aa MW: 77106.9 Da PI: 6.584

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_2BS_D32231DB0.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	422.1	4.7e-129	349	714	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsev 87 lv+lLl+cA++vs+gd+ a + L l+ asp gd+mqR+a+yf+ ALa+rl+ s++ ++ + + + s ++l+++++++++ Traes_2BS_D32231DB0.1 349 LVHLLLACADFVSKGDQPSALRHLHLLRRVASPLGDSMQRVASYFADALATRLSVsSGTAISPRGAGAPYPFPPSPDTLKIYQILYQA 436 68*************************************************9845555555444444444459********* PP GRAS 88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvp 175 +P++kf+h+taNqaI ea++ge+rvH++D+di qG QWpa+lqaLa+Rp+gpp+lR+Tgvg+ +++++etg+ La++A++l+vp Traes_2BS_D32231DB0.1 437 CPYIKFAHFTANQAIFEAFHGEDRVHVVDLDILQGYQWPAFLQALAARPGGPPTLRLTGVGH----PATAVRETGRHLASLAASLRVP 520 **********************************************************....88**************** PP GRAS 176 fefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealey 263 fef++ va++le l++ +L+ + gEalaVn v ++hr++ ++l +L+++++ Pk++++veqea hn++ Fl rfleal+y Traes_2BS_D32231DB0.1 521 FEFHAAVADKLERLRPAALQRRVGEALAVNAVNRMHRVP--GAHLG----PLLSMIRDQAPKIMTLVEQEAGHNGPYFLGRFLEALHY 602 **********************************9..44444....5********************************* PP GRAS 264 ysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyr 350 ysa+fdsl+a++p++s r+kvE+ ll++ei+nvvacegaer++rhe+l +Wr+ +e+ GF++vpls a+ q + ll ++ +dgyr Traes_2BS_D32231DB0.1 603 YSAIFDSLDATFPADSAPRMKVEQCLLAPEIRNVVACEGAERVARHERLDRWRRIMEDRGFEAVPLSPAAVGQSQVLLGLYGaGDGYR 690 ************************************************************************************ PP GRAS 351 veeesgslvlgWkdrpLvsvSaWr 374 ++ee+g+l+lgW+dr+++ +SaWr Traes_2BS_D32231DB0.1 691 LNEEKGCLLLGWQDRAIIGASAWR 714 *********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	67.136	323	693	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.6E-126	349	714	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 715 aa Download sequence Send to blast
MGTLNCAVDM SSGTKQLQHQ PAAPTSPTAS FSESNIVASS ADPDAIDALA GLQALRFDGD 60 IDGEIQSPDL AMWESLFADQ IGAGAASGAD FLMSSPRRDF SPLRDFMASS PKRDYMVSSP 120 KRDYMMSSPK RDYMVSSPKR EMVASPRRTF SNLYNNSTSN QSYMHGTLHG MDTGSPSNLA 180 GYGKGKSSQS PLHKGFVNNA HSNSSKSNLS CSSSYVNSSE NLALPSLNSS FLEDGYLAYQ 240 LPPEKDAGGS SSAGTSATQL PTLSECLAMP EPVYGARDEA AVGRGIPVGG LQPDHLYYAS 300 QFGAADGLPL QHQMAKPDQW ADSSSLHSML GSVIQSDQAE QEQDSGLQLV HLLLACADFV 360 SKGDQPSALR HLHLLRRVAS PLGDSMQRVA SYFADALATR LSVSSGTAIS PRGAGAPYPF 420 PPSPDTLKIY QILYQACPYI KFAHFTANQA IFEAFHGEDR VHVVDLDILQ GYQWPAFLQA 480 LAARPGGPPT LRLTGVGHPA TAVRETGRHL ASLAASLRVP FEFHAAVADK LERLRPAALQ 540 RRVGEALAVN AVNRMHRVPG AHLGPLLSMI RDQAPKIMTL VEQEAGHNGP YFLGRFLEAL 600 HYYSAIFDSL DATFPADSAP RMKVEQCLLA PEIRNVVACE GAERVARHER LDRWRRIMED 660 RGFEAVPLSP AAVGQSQVLL GLYGAGDGYR LNEEKGCLLL GWQDRAIIGA SAWRC

Sequence ? help Back to Top

Protein Sequence Length: 715 aa Download sequence Send to blast

MGTLNCAVDM SSGTKQLQHQ PAAPTSPTAS FSESNIVASS ADPDAIDALA GLQALRFDGD  60
IDGEIQSPDL AMWESLFADQ IGAGAASGAD FLMSSPRRDF SPLRDFMASS PKRDYMVSSP  120
KRDYMMSSPK RDYMVSSPKR EMVASPRRTF SNLYNNSTSN QSYMHGTLHG MDTGSPSNLA  180
GYGKGKSSQS PLHKGFVNNA HSNSSKSNLS CSSSYVNSSE NLALPSLNSS FLEDGYLAYQ  240
LPPEKDAGGS SSAGTSATQL PTLSECLAMP EPVYGARDEA AVGRGIPVGG LQPDHLYYAS  300
QFGAADGLPL QHQMAKPDQW ADSSSLHSML GSVIQSDQAE QEQDSGLQLV HLLLACADFV  360
SKGDQPSALR HLHLLRRVAS PLGDSMQRVA SYFADALATR LSVSSGTAIS PRGAGAPYPF  420
PPSPDTLKIY QILYQACPYI KFAHFTANQA IFEAFHGEDR VHVVDLDILQ GYQWPAFLQA  480
LAARPGGPPT LRLTGVGHPA TAVRETGRHL ASLAASLRVP FEFHAAVADK LERLRPAALQ  540
RRVGEALAVN AVNRMHRVPG AHLGPLLSMI RDQAPKIMTL VEQEAGHNGP YFLGRFLEAL  600
HYYSAIFDSL DATFPADSAP RMKVEQCLLA PEIRNVVACE GAERVARHER LDRWRRIMED  660
RGFEAVPLSP AAVGQSQVLL GLYGAGDGYR LNEEKGCLLL GWQDRAIIGA SAWRC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	1e-83	356	713	25	377	Protein SCARECROW
5b3h_D	1e-83	356	713	25	377	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269\|PubMed:23122845}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269\|PubMed:23122845}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020178448.1	0.0	DELLA protein RGL1-like
Swissprot	G7L166	0.0	RAM1_MEDTR; GRAS family protein RAM1
TrEMBL	A0A3B6BZW5	0.0	A0A3B6BZW5_WHEAT; Uncharacterized protein
STRING	Traes_2BS_D32231DB0.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9221	31	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	1e-102	RGA-like 1

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Tang H, et al. An improved genome release (version Mt4.0) for the model legume Medicago truncatula. BMC Genomics, 2014. 15: p. 312 [PMID:24767513] Pecrix Y, et al. Whole-genome landscape of Medicago truncatula symbiotic genes. Nat Plants, 2018. 4(12): p. 1017-1025 [PMID:30397259]