PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BS_C116E5668.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 356aa    MW: 38279.9 Da    PI: 7.0618
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BS_C116E5668.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.77.9e-52141411128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                            lppGfrFhPtdeel+ +yL++++++ ++++  +i++vdiyk++PwdLp+++  ++ ewyfFs+rd+ky++g r+nra+ sgyWkatg+
  Traes_2BS_C116E5668.1  14 LPPGFRFHPTDEELILHYLRNRAAAAPCPV-PIIADVDIYKFDPWDLPSQAVYGDCEWYFFSPRDRKYPNGIRPNRAAGSGYWKATGT 100
                            79****************************.88***************76667789******************************** PP

                    NAM  89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                            dk+++++ +g+ vg+kk Lvfykgr pkg+kt W+mheyrl
  Traes_2BS_C116E5668.1 101 DKPIHDAaTGQGVGVKKALVFYKGRPPKGTKTAWIMHEYRL 141
                            *****9978888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-6411176IPR003441NAC domain
PROSITE profilePS5100560.53914176IPR003441NAC domain
PfamPF023652.7E-2715141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MSMAQQGHGA ATSLPPGFRF HPTDEELILH YLRNRAAAAP CPVPIIADVD IYKFDPWDLP  60
SQAVYGDCEW YFFSPRDRKY PNGIRPNRAA GSGYWKATGT DKPIHDAATG QGVGVKKALV  120
FYKGRPPKGT KTAWIMHEYR LAADPLAAAV NTYKPIKFRN VSMRLDDWVL CRIYKKTGLA  180
SPMVPPLADY DHMADHDDLS GGGSTFDDAA CSFYAHSSSS GGACGTMITQ QQPHAGRLPT  240
IPSFSELFDD YSLAQILDAE AEHGATHHLA VHPSLNMLLP VGDSAHGVQP SYYAPSSSSP  300
DTSGGSAGKR KAASPEESSA KRLNGSCFDA PPQSATGWQG AASVLGGLSH QMLPQF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-7011781170Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT7834500.0KT783450.1 Triticum aestivum NAC transcription factor 29 (NAC29) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020161118.10.0protein ATAF2-like
TrEMBLA0A3B6C0270.0A0A3B6C027_WHEAT; Uncharacterized protein
TrEMBLA0A446LWY60.0A0A446LWY6_TRITD; Uncharacterized protein
STRINGTraes_2BS_C116E5668.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123736123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.14e-75NAC-like, activated by AP3/PI
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]