PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2BS_B8359978A.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NAC | ||||||||
Protein Properties | Length: 282aa MW: 31021.2 Da PI: 5.4295 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 100.3 | 2.8e-31 | 2 | 80 | 54 | 129 |
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrle 129 +ekew+fF+++ +ky+tg+r+nratk+gyWkatgkdke+++ + lvg+kktLvfy+grap+g kt Wvmheyrle Traes_2BS_B8359978A.2 2 GEKEWFFFVHKGRKYPTGTRTNRATKKGYWKATGKDKEIFRGkgrDAVLVGMKKTLVFYTGRAPSGGKTPWVMHEYRLE 80 578*************************************984444445****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 39.293 | 1 | 103 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.27E-35 | 2 | 103 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.6E-15 | 6 | 79 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MGEKEWFFFV HKGRKYPTGT RTNRATKKGY WKATGKDKEI FRGKGRDAVL VGMKKTLVFY 60 TGRAPSGGKT PWVMHEYRLE GELPHRLPRT AKDDWAVCRV FNKDLAARNA PQMAPAADGG 120 MEDPLAFLDD LLIDTDLFDD ADLPMLMDSP SGADDFAGAS SSTCSAALPL EPDAELPVLH 180 PQQQQSPNYF FMPATANGNL GGAEYSPYQA MGDQQAAIRR YCKPKAEVAS SSALLSPSLG 240 LDTAALAGAE TSFLMPSSRS YLDLEELFRG EPLMDYSNMW KI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-29 | 1 | 109 | 68 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-29 | 1 | 109 | 68 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-29 | 1 | 109 | 68 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-29 | 1 | 109 | 68 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-29 | 1 | 109 | 71 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-29 | 1 | 109 | 71 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-29 | 1 | 109 | 71 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-29 | 1 | 109 | 71 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-29 | 1 | 109 | 71 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-29 | 1 | 109 | 71 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-29 | 1 | 109 | 71 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-29 | 1 | 109 | 71 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-29 | 1 | 109 | 68 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-29 | 1 | 109 | 68 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ010830 | 0.0 | AJ010830.1 Triticum sp. mRNA for GRAB2 protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020182284.1 | 1e-168 | NAC domain-containing protein 92-like | ||||
TrEMBL | A0A3B6C087 | 0.0 | A0A3B6C087_WHEAT; Uncharacterized protein | ||||
STRING | Traes_2BS_B8359978A.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP49388 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04060.1 | 1e-48 | NAC domain containing protein 46 |
Publications ? help Back to Top | |||
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