PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2BS_B65714572.1 | ||||||||
Common Name | WRKY1A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | WRKY | ||||||||
Protein Properties | Length: 293aa MW: 31118.6 Da PI: 6.732 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 89 | 3.9e-28 | 119 | 179 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dDg++WrKYGqK++ g+++pr+YYrCt++ gCp++k+v+r+++dp +++++Y+g+H+++ Traes_2BS_B65714572.1 119 DDGHSWRKYGQKDILGAKHPRAYYRCTHRnsqGCPATKQVQRADQDPALFDVVYHGQHTCR 179 7***************************98889**************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 22.423 | 113 | 176 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.3E-28 | 114 | 179 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.66E-25 | 117 | 179 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.0E-39 | 118 | 180 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.7E-27 | 119 | 179 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MESVEGNGTG RGNLQLVVSE LCRVQELVRQ LELHLHAPDA SIDLCRALTA EIFALTDRSI 60 GFVAAHFPDA PTTPSSTSSS LSGVSDQPFR TNTKKRKATA RWTSQVRVSA AGGAEGPGDD 120 GHSWRKYGQK DILGAKHPRA YYRCTHRNSQ GCPATKQVQR ADQDPALFDV VYHGQHTCRP 180 TGSGGGRRPP TNQHNPHAES LLQSLRAGLT VDADHGGPNA SVSPLGASPV ASGSNGGLTM 240 SPYPVPAGAY TEWPLDGDLQ EVVSALTAVS APSMDCLFEF DPTFGDGVPN FFM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 6e-24 | 119 | 179 | 9 | 69 | OsWRKY45 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ334400 | 0.0 | DQ334400.1 Triticum aestivum WRKY transcription factor WRKY1A (WRKY1A) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020187901.1 | 0.0 | probable WRKY transcription factor 41 | ||||
TrEMBL | A0A446M139 | 0.0 | A0A446M139_TRITD; Uncharacterized protein | ||||
TrEMBL | A7X9Y3 | 0.0 | A7X9Y3_WHEAT; WRKY transcription factor WRKY1A | ||||
STRING | Traes_2BS_B65714572.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1086 | 38 | 131 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11070.2 | 2e-37 | WRKY family protein |
Publications ? help Back to Top | |||
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