PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BS_ACA52BC08.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 464aa    MW: 49369.6 Da    PI: 6.2049
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BS_ACA52BC08.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.71e-05107127323
                            ETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                            C  Cgk Fs++ +L  H+++H
  Traes_2BS_ACA52BC08.1 107 CRECGKLFSSWRSLFGHMKSH 127
                            ********************9 PP
2zf-C2H2156.9e-05309331123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            y+Cp Cg++Fs+   L  H  +H
  Traes_2BS_ACA52BC08.1 309 YECPGCGRVFSSYQALGGHRASH 331
                            99***********9999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139128.2E-61942IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.5332047IPR007087Zinc finger, C2H2
SMARTSM003550.0622042IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.6E-42042IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002802242IPR007087Zinc finger, C2H2
SMARTSM003550.018105127IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.118105128IPR007087Zinc finger, C2H2
SuperFamilySSF576673.05E-8106127No hitNo description
PfamPF139124.0E-5107127IPR007087Zinc finger, C2H2
PROSITE patternPS000280107127IPR007087Zinc finger, C2H2
SuperFamilySSF576673.05E-8304331No hitNo description
PfamPF139122.8E-11308333IPR007087Zinc finger, C2H2
SMARTSM003550.054309331IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.429309336IPR007087Zinc finger, C2H2
PROSITE patternPS000280311331IPR007087Zinc finger, C2H2
PfamPF139121.9E-10393415IPR007087Zinc finger, C2H2
SMARTSM003550.31393415IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.432393415IPR007087Zinc finger, C2H2
PROSITE patternPS000280395415IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MDAVGELAAA GMHHHHHHHH RCKVCGKGFS CGRSLGGHMR SHISLGEALP EADDELMRRS  60
SANGGRTSAN GAVGYGLREN PKKTRRLSDF ADEEEDQGGD GGEQRACREC GKLFSSWRSL  120
FGHMKSHAPG AARDHDEYDE ADDDVDLLGE EEYSFAAEAE AEAEKEEEEE EMEAAPMEPL  180
VPAPVAVMAA PPRRRRRSMR VAAPAPAPPP PMLSAFEKEQ EDVALCLLML SRDSTGGMRG  240
SPAPKQAHLP RNGYGYNSDD DSALFQYGDA KTKSVAKSKK RRTSHYALNS ASPKQRGEAA  300
PPPAKRTRYE CPGCGRVFSS YQALGGHRAS HKRINTSCSA PKAAPAAAPA PEPSVDTYTS  360
FGTLSPSASP DSVAIGIGAG SNKKPAAAEA EKFECPVCFR VFGSGQALGG HKRSHIIADT  420
AFSSDGELYG SASVSVNEEQ EQGYPVAAAG SLDLNFPPAP SEEA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126153e-41CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
GenBankCT8361333e-41CT836133.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA021B11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020182857.10.0zinc finger protein ZAT9-like
TrEMBLA0A3B6C3870.0A0A3B6C387_WHEAT; Uncharacterized protein
TrEMBLA0A446M3280.0A0A446M328_TRITD; Uncharacterized protein
STRINGTraes_2BS_ACA52BC08.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38613573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.15e-19C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]