PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BS_924D34AA1.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 350aa    MW: 38376.2 Da    PI: 7.994
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BS_924D34AA1.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.87.6e-52141411128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                            lppGfrFhPtdeel+ +yL++++++ ++++  +i++vdiyk++PwdLp+++  ++ ewyfFs+rd+ky++g r+nra+ sgyWkatg+
  Traes_2BS_924D34AA1.1  14 LPPGFRFHPTDEELILHYLRNRAAAAPCPV-PIIADVDIYKFDPWDLPSQAVYGDCEWYFFSPRDRKYPNGIRPNRAAGSGYWKATGT 100
                            79****************************.88***************76667789******************************** PP

                    NAM  89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                            dk+++++ +g+ vg+kk Lvfykgr pkg+kt W+mheyrl
  Traes_2BS_924D34AA1.1 101 DKPIHDAaTGQGVGVKKALVFYKGRPPKGTKTAWIMHEYRL 141
                            *****9978888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-6411176IPR003441NAC domain
PROSITE profilePS5100560.53914176IPR003441NAC domain
PfamPF023652.6E-2715141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MSMAQQGQGA ATSLPPGFRF HPTDEELILH YLRNRAAAAP CPVPIIADVD IYKFDPWDLP  60
SQAVYGDCEW YFFSPRDRKY PNGIRPNRAA GSGYWKATGT DKPIHDAATG QGVGVKKALV  120
FYKGRPPKGT KTAWIMHEYR LAADPLAAAV NTYKPIKFRN VSMRLDDWVL CRIYKKTGLA  180
SPMVPPLADY DHMADHDDLS SGGTFTDATC RPMIRQQHHQ QPHAGRLPTF PSFSELFDDY  240
AFGQNLDTYV EHGATHHLAV HPSLNQLLPV GDSRHVVEPS YYSPSSSSPD ASGGSAGKRK  300
AASPEEPGTH QPSAKKLNGS CFDAPPQSAN GWQAVASVLG GLNHHMLPQF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-701317616165NO APICAL MERISTEM PROTEIN
1ut4_B6e-701317616165NO APICAL MERISTEM PROTEIN
1ut7_A6e-701317616165NO APICAL MERISTEM PROTEIN
1ut7_B6e-701317616165NO APICAL MERISTEM PROTEIN
3swm_A7e-701317619168NAC domain-containing protein 19
3swm_B7e-701317619168NAC domain-containing protein 19
3swm_C7e-701317619168NAC domain-containing protein 19
3swm_D7e-701317619168NAC domain-containing protein 19
3swp_A7e-701317619168NAC domain-containing protein 19
3swp_B7e-701317619168NAC domain-containing protein 19
3swp_C7e-701317619168NAC domain-containing protein 19
3swp_D7e-701317619168NAC domain-containing protein 19
3ulx_A6e-7011761168Stress-induced transcription factor NAC1
4dul_A6e-701317616165NAC domain-containing protein 19
4dul_B6e-701317616165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility. {ECO:0000269|PubMed:22278768}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought, salt and cold treatments. {ECO:0000269|PubMed:18813954}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT7834500.0KT783450.1 Triticum aestivum NAC transcription factor 29 (NAC29) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020160301.10.0NAC transcription factor NAM-B1-like
SwissprotQ8H4S43e-81NAC10_ORYSJ; NAC domain-containing protein 10
TrEMBLA0A3B6BZY50.0A0A3B6BZY5_WHEAT; Uncharacterized protein
TrEMBLA0A446LWU70.0A0A446LWU7_TRITD; Uncharacterized protein
STRINGTraes_2BS_924D34AA1.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123736123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.12e-74NAC-like, activated by AP3/PI
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]