PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BS_736EF207B1.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 595aa    MW: 64056.6 Da    PI: 5.9768
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BS_736EF207B1.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS311.12.5e-951905942374
                    GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fsev 87 
                              +lL+ecA+av++++ +++q+l++ l+elasp+gd  q+la+yf+++L arl+ s++++ ++l++ ++++++  +++  + l f+e+
  Traes_2BS_736EF207B1.2 190 SQLLMECARAVATRESQRVQQLMWMLNELASPYGDVEQKLASYFLQGLFARLTASGPRTLRTLAAATDRNTS-FDSTRRTALrFQEL 275
                             589************************************************************999998544.4444444446**** PP

                    GRAS  88 sPilkfshltaNqaIleavege.......ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.....skeeleet 161
                             sP+  f+h++aN aIle++ ++       +r Hi+D++ + ++QWp+Ll+aLa+R+ +++p+l iT+v+s++++      ++ ++e+
  Traes_2BS_736EF207B1.2 276 SPWSSFGHVAANGAILESFLEAaaassepQRFHILDLSNTFCTQWPTLLEALATRSpDDTPHLSITTVVSAAPSaptsaVQRVMREI 362
                             *****************987766667778999***********************9899**********99888899989999**** PP

                    GRAS 162 gerLakfAeelgvpfefnvlvak.rledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveq 244
                             g+r++kfA+ +gvpf+f++++++ +l++l+l++L+++       +aVn++ +l  ++  ++  +  r ++   +++l+P+vv+vve+
  Traes_2BS_736EF207B1.2 363 GQRMEKFARLMGVPFRFRAVHHSgDLAELDLDSLDLRGggaTTGIAVNCMNSLRGVV--PGGARR-RGAFAASLRRLEPRVVTVVEE 446
                             ********************8888*************96555569***********9..555555.89******************* PP

                    GRAS 245 eadh.nse.............sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWre 317
                             ead+   +              Fl+ f e l+++sa +dsle+++p++s+er  +Er   gr+iv++v+c  +e+ er+et++ W +
  Traes_2BS_736EF207B1.2 447 EADLvA-TdpdasdeggdteaAFLKVFGEGLRFFSAYMDSLEESFPKTSNERLALERG-AGRAIVDLVSCPASESMERRETAAAWAR 531
                             ***953.4479999******9*************************************.**************************** PP

                    GRAS 318 rleeaGFkpvplsekaakqaklllrkvksdgyrveee.......sgslvlgWkdrpLvsvSaWr 374
                             rl++aGF+pvp+se++a+++++llr++  +g+++ e         + ++l Wk++pLv++SaWr
  Traes_2BS_736EF207B1.2 532 RLRSAGFSPVPFSEDVADDVRSLLRRYR-EGWSMREAstddsaaGAGVFLAWKEQPLVWASAWR 594
                             ****************************.88888755556666455566**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098552.466163568IPR005202Transcription factor GRAS
PfamPF035148.8E-93190594IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0009956Biological Processradial pattern formation
GO:0045930Biological Processnegative regulation of mitotic cell cycle
GO:0048366Biological Processleaf development
GO:0055072Biological Processiron ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MDTLFRLVSL QASEQQQQQQ QSASYNSRST TSSGSRSSSH QTNASYNYYH HSSSSGGGGG  60
GGQYYYSQQQ QPQQSYYLEP YQEECGGNAH QHHLYMDEDF SSSSSSRQHF HSHGGAAHPP  120
TSSATPTAPT PPLSTSSTAG GAGHALFEAA DLSFPPDLNL DFSSPASSSG AGGTASSAAV  180
GGGGGGRWAS QLLMECARAV ATRESQRVQQ LMWMLNELAS PYGDVEQKLA SYFLQGLFAR  240
LTASGPRTLR TLAAATDRNT SFDSTRRTAL RFQELSPWSS FGHVAANGAI LESFLEAAAA  300
SSEPQRFHIL DLSNTFCTQW PTLLEALATR SPDDTPHLSI TTVVSAAPSA PTSAVQRVMR  360
EIGQRMEKFA RLMGVPFRFR AVHHSGDLAE LDLDSLDLRG GGATTGIAVN CMNSLRGVVP  420
GGARRRGAFA ASLRRLEPRV VTVVEEEADL VATDPDASDE GGDTEAAFLK VFGEGLRFFS  480
AYMDSLEESF PKTSNERLAL ERGAGRAIVD LVSCPASESM ERRETAAAWA RRLRSAGFSP  540
VPFSEDVADD VRSLLRRYRE GWSMREASTD DSAAGAGVFL AWKEQPLVWA SAWRP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B1e-15918459528420Protein SHORT-ROOT
5b3h_E1e-15918459528420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification. {ECO:0000269|PubMed:17446396}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3709790.0AK370979.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2121H05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020176974.10.0protein SHORT-ROOT 1
SwissprotQ8H2X80.0SHR1_ORYSJ; Protein SHORT-ROOT 1
TrEMBLA0A446M3L00.0A0A446M3L0_TRITD; Uncharacterized protein
STRINGTraes_2BS_736EF207B1.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35263781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-121GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]