PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BS_0544D9D4B.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 105aa    MW: 10931.8 Da    PI: 7.6279
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BS_0544D9D4B.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26e-052547123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           y+C+ C++ F++   L  H++ H
  Traes_2BS_0544D9D4B.1 25 YECSFCKRGFTNAQALGGHMNIH 47
                           99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.07E-72351No hitNo description
PfamPF139127.4E-62449IPR007087Zinc finger, C2H2
SMARTSM003550.0092547IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.3232552IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.8E-42549IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002802747IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    Send to blast
MEGGDFHKSG SPEDTGGSRR APAYYECSFC KRGFTNAQAL GGHMNIHRKD RGGSGGKSRG  60
AAPPAAGQQD GAGGNQAHLG LTLGRNGDSG EDVDLELRLG HYPYN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010228158.12e-55uncharacterized protein LOC104581666
TrEMBLA0A3B6C1W86e-70A0A3B6C1W8_WHEAT; Uncharacterized protein
TrEMBLA0A446M0Q36e-70A0A446M0Q3_TRITD; Uncharacterized protein
STRINGTraes_2BS_0544D9D4B.11e-70(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63633244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.15e-14C2H2 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]