PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_2BL_C1DE13045.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

FAR1

Protein Properties

Length: 667aa MW: 75829.8 Da PI: 7.6

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_2BL_C1DE13045.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	57.3	5.1e-18	49	142	2	90
FAR1 2 fYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek...dgkwevtklele 84 Y+ +Ak++GFs+r+++++ + + t+r fvC + g++ + + k++r+r+++r+gC+a l++ ++ +w+vt ++++ Traes_2BL_C1DE13045.1 49 LYSGFAKQCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPAKPFDdGAKQQRNRKSSRCGCQAYLRIGRDAgagGLEWRVTGFSNH 136 79**********9998877356667999*****998887664678899*************99877789***** PP FAR1 85 HnHela 90 HnHel Traes_2BL_C1DE13045.1 137 HNHELL 142 **96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-15	49	142	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.5E-16	265	351	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.002	541	577	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.5E-8	548	576	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.0E-6	552	579	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 667 aa Download sequence Send to blast
MERPSSGEEG ERDSPNERRI SLETAAAEAD DSVPYIGQRF PTHEAAYELY SGFAKQCGFS 60 IRRHRTEGKD GVGKGLTRRY FVCHRAGNTP AKPFDDGAKQ QRNRKSSRCG CQAYLRIGRD 120 AGAGGLEWRV TGFSNHHNHE LLRQDEVRFL PAYRVISDSD RDRILVFAKS GISVQQMMRI 180 MELEKCVQPG NLPFTDKDVR NLIHSFRRFD QEDEIVDLLK MCRNVKEKDP NFKYDYTKDA 240 SNCLENIAWS YASSIQSYEV FGDAVVFDTT HRLTSIDMTL GIWIGMNNHG MPCFFSCALL 300 REGNLQSFTW ALQVFLNFMN RKAPQTILTD QNMYLKEAVQ KELPNTKHAL SIGLIALRFP 360 SWFNAVLGRH YNDWENEFYR LNNMESTMDF DLGWSDMVSC YGLHGNRHIA SLFASRKLWA 420 SPYLGGHFSA GLAALPGISK IKDFIQRLLS AQTCLSHFIE QVAVVVDYKD QAGEQQIAQQ 480 SLENTILKTA APVEGHAAAV FTPYAFYKLQ DELVEAAHYA YFHLEGNAFL VRHHTKTDGG 540 CNVTWNQKEE LISCSCQMFE SSGILCRHAL RVLTTLNYFQ IPDHYLPVRW HRTQPQHSKS 600 LIGAPDHGRS YERVKALQSM VSVLVSEAGK SEERMDLATQ EVSVLLSRIR QQPVVANVSG 660 DSVRQQR

Sequence ? help Back to Top

Protein Sequence Length: 667 aa Download sequence Send to blast

MERPSSGEEG ERDSPNERRI SLETAAAEAD DSVPYIGQRF PTHEAAYELY SGFAKQCGFS  60
IRRHRTEGKD GVGKGLTRRY FVCHRAGNTP AKPFDDGAKQ QRNRKSSRCG CQAYLRIGRD  120
AGAGGLEWRV TGFSNHHNHE LLRQDEVRFL PAYRVISDSD RDRILVFAKS GISVQQMMRI  180
MELEKCVQPG NLPFTDKDVR NLIHSFRRFD QEDEIVDLLK MCRNVKEKDP NFKYDYTKDA  240
SNCLENIAWS YASSIQSYEV FGDAVVFDTT HRLTSIDMTL GIWIGMNNHG MPCFFSCALL  300
REGNLQSFTW ALQVFLNFMN RKAPQTILTD QNMYLKEAVQ KELPNTKHAL SIGLIALRFP  360
SWFNAVLGRH YNDWENEFYR LNNMESTMDF DLGWSDMVSC YGLHGNRHIA SLFASRKLWA  420
SPYLGGHFSA GLAALPGISK IKDFIQRLLS AQTCLSHFIE QVAVVVDYKD QAGEQQIAQQ  480
SLENTILKTA APVEGHAAAV FTPYAFYKLQ DELVEAAHYA YFHLEGNAFL VRHHTKTDGG  540
CNVTWNQKEE LISCSCQMFE SSGILCRHAL RVLTTLNYFQ IPDHYLPVRW HRTQPQHSKS  600
LIGAPDHGRS YERVKALQSM VSVLVSEAGK SEERMDLATQ EVSVLLSRIR QQPVVANVSG  660
DSVRQQR

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK248760	0.0	AK248760.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf2n05, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020180634.1	0.0	protein FAR1-RELATED SEQUENCE 11-like
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A446ME05	0.0	A0A446ME05_TRITD; Uncharacterized protein
STRING	Traes_2BL_C1DE13045.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15171	15	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]