PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2BL_A014BCC51.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 444aa MW: 46956.4 Da PI: 7.1904 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 15.1 | 4.4e-05 | 329 | 366 | 12 | 54 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +++eYIk L Traes_2BL_A014BCC51.2 329 RKEKLGDRITALQQLVSPF-----GKTDTASVLHETIEYIKFL 366 677888999*******998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.017 | 317 | 366 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.8E-8 | 327 | 375 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.66E-11 | 327 | 385 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.70E-5 | 327 | 370 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 444 aa Download sequence Send to blast |
MGDHQLMHAA PAMYNGSGAG AVSHGMWWNS NAAAAVPSAA CSTELAGFNT WPAGLAAGGY 60 DVAADGGKQA KSCTTTASSE SPGNNSSLTF QETASINDPA AAGFADWNNP YIHMMIIDPH 120 KSSGAGNMHG FLQVGHHDMS SRTDQQSMMN AVAAPNNLDL ALQGHHHHQQ QQDDHHRQQQ 180 LLSSLGAPEL LLSPNSPYGF QSSLLRSLIE PTGKPAPAAG LLQQYQYQQM GGQTGARGEP 240 LQFTNDAAFW NQSAGFGMGM AAPPATDNTS VRAAKQPSPA PRGANLALKT VLEGVGDSSS 300 IVAKKAGGEP AFKKPRMETP SPLPTFKVRK EKLGDRITAL QQLVSPFGKT DTASVLHETI 360 EYIKFLHDQV GVLSAPYLKS GHHQHQVPQY LKSSSNGSPD KSCKDGGEVS LKGRGLCLVP 420 ISSTFAVASD VPVDFWNPFG PQFR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK364303 | 0.0 | AK364303.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2023J11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020168093.1 | 0.0 | transcription factor bHLH112-like | ||||
TrEMBL | A0A446MVH0 | 0.0 | A0A446MVH0_TRITD; Uncharacterized protein | ||||
STRING | Traes_2BL_A014BCC51.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2216 | 37 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61660.1 | 3e-45 | bHLH family protein |
Publications ? help Back to Top | |||
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