PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2BL_79F1B50DF.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 289aa MW: 30942.7 Da PI: 7.5039 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.8 | 4.4e-17 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+llvd+v+ +g+W+ ++ g++R++k+c++rw +yl Traes_2BL_79F1B50DF.1 15 KGPWTPEEDKLLVDYVQANAPGNWRMLPKLAGLNRCGKSCRLRWTNYL 62 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53 | 8e-17 | 68 | 112 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eE++ ++++++ G++ W+ Ia+ ++ gRt++++k++w++ Traes_2BL_79F1B50DF.1 68 RGPFTPEEHKSILQLHAIVGNK-WSMIAAQLP-GRTDNEIKNYWNTN 112 89********************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.591 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.38E-31 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.5E-13 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-14 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-23 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.08E-9 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 25.965 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 5.2E-15 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.3E-15 | 68 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.40E-11 | 70 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-26 | 70 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MGRTPCCESR QGLKKGPWTP EEDKLLVDYV QANAPGNWRM LPKLAGLNRC GKSCRLRWTN 60 YLRPDIKRGP FTPEEHKSIL QLHAIVGNKW SMIAAQLPGR TDNEIKNYWN TNLKKQLRQA 120 ALVGEQHPAL ASPGASVGAG CLAARHTAQW ETARLEAEAR LSMLSTSAAT TSVTASSSSS 180 TAAAGGEHGA DAPSDVFLRL WNSEVGDTFR RKSAGSAPRE GSAPREGAQP AAAPLPPPGD 240 DSSAASNVTT AVTAEEYQVF LDMAAEELGL FHGGFSLYPP ADGLFAEFQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 4e-28 | 13 | 117 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK108621 | 1e-133 | AK108621.1 Oryza sativa Japonica Group cDNA clone:002-147-D04, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020156867.1 | 0.0 | myb-related protein Myb4-like | ||||
Swissprot | Q9M2D9 | 6e-79 | MYB17_ARATH; Transcription factor MYB17 | ||||
TrEMBL | A0A3B6CC34 | 0.0 | A0A3B6CC34_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446MIF3 | 0.0 | A0A446MIF3_TRITD; Uncharacterized protein | ||||
STRING | Traes_2BL_79F1B50DF.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5409 | 31 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61250.1 | 3e-77 | myb domain protein 17 |
Publications ? help Back to Top | |||
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