PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2BL_4B6057E06.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | TCP | ||||||||
Protein Properties | Length: 251aa MW: 26985.8 Da PI: 10.5489 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 108.2 | 1.3e-33 | 100 | 181 | 3 | 79 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.sec....eaesss 79 g+ + +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++t+eWLl+qa+p+i ++tg+++++a +c ++++ s Traes_2BL_4B6057E06.1 100 GAAKGAKDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTVEWLLRQAEPSILAATGSGTTPAvFSCssapSTAAVS 181 5666789********************************************************8888854443222111111 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.5E-29 | 104 | 193 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 26.413 | 105 | 159 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MKLQPLYKFA PHRVRDQADK ALSIHPSPSD HLPTHLCATR TKAKPPAAMA SRDAATFQLY 60 RPMAMPTATL MPQTMAMPGF SSAEAADDAV VRVPAPRTAG AAKGAKDRHS KVNGRGRRVR 120 MPIVCAARVF QLTRELGLKS DGQTVEWLLR QAEPSILAAT GSGTTPAVFS CSSAPSTAAV 180 SLLGKRPRED HEHEAAPSFW EALQARPVPW GLSPSLEAQA YASSVAQGHH HHLNLLSALS 240 GASRRPEEES R |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK359408 | 0.0 | AK359408.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1096D21. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020178782.1 | 1e-118 | transcription factor TCP7-like | ||||
Swissprot | Q9FMX2 | 2e-36 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | A0A3B6C9W3 | 0.0 | A0A3B6C9W3_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446MIR8 | 0.0 | A0A446MIR8_TRITD; Uncharacterized protein | ||||
STRING | Traes_2BL_4B6057E06.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1941 | 33 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08330.1 | 1e-38 | TCP family protein |
Publications ? help Back to Top | |||
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